Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | X874_RS04105 | Genome accession | NZ_CP006944 |
| Coordinates | 856858..857337 (+) | Length | 159 a.a. |
| NCBI ID | WP_025247571.1 | Uniprot ID | - |
| Organism | Mannheimia varigena USDA-ARS-USMARC-1312 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 851858..862337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| X874_RS04085 (X874_8090) | - | 852762..853457 (+) | 696 | WP_025247567.1 | aspartate/glutamate racemase family protein | - |
| X874_RS04090 (X874_8100) | - | 853475..854785 (+) | 1311 | WP_025247568.1 | anaerobic C4-dicarboxylate transporter | - |
| X874_RS04095 (X874_8110) | - | 855012..855245 (+) | 234 | WP_025247569.1 | YgjV family protein | - |
| X874_RS04100 (X874_8120) | radA | 855299..856678 (-) | 1380 | WP_025247570.1 | DNA repair protein RadA | - |
| X874_RS04105 (X874_8130) | pilA | 856858..857337 (+) | 480 | WP_025247571.1 | prepilin peptidase-dependent pilin | Machinery gene |
| X874_RS04110 (X874_8140) | pilB | 857358..858749 (+) | 1392 | WP_025247572.1 | GspE/PulE family protein | Machinery gene |
| X874_RS04115 (X874_8150) | pilC | 858742..859938 (+) | 1197 | WP_025247573.1 | type II secretion system F family protein | Machinery gene |
| X874_RS04120 (X874_8160) | - | 859942..860598 (+) | 657 | WP_025247574.1 | prepilin peptidase | - |
| X874_RS04125 (X874_8170) | coaE | 860630..861265 (+) | 636 | WP_025247575.1 | dephospho-CoA kinase | - |
| X874_RS04130 (X874_8180) | yacG | 861247..861432 (+) | 186 | WP_025217069.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17047.43 Da Isoelectric Point: 9.0783
>NTDB_id=115071 X874_RS04105 WP_025247571.1 856858..857337(+) (pilA) [Mannheimia varigena USDA-ARS-USMARC-1312]
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGSCSATATPNG
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGSCSATATPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=115071 X874_RS04105 WP_025247571.1 856858..857337(+) (pilA) [Mannheimia varigena USDA-ARS-USMARC-1312]
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATCCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCTATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGAAATGAAACTAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCAGGTTCCTGTAGTGCTACGGCTACACCAAATGGCTAA
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATCCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCTATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGAAATGAAACTAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCAGGTTCCTGTAGTGCTACGGCTACACCAAATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
64.78 |
100 |
0.648 |
| pilA | Haemophilus influenzae 86-028NP |
57.857 |
88.05 |
0.509 |
| pilA | Haemophilus influenzae Rd KW20 |
54.93 |
89.308 |
0.491 |