Detailed information NTG0115050

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: X808_RS04065
• Genome accession: NZ_CP006943
• Coordinates: 854227..855423 (+)
• Length: 398 a.a.
• NCBI ID: WP_025217066.1
• Uniprot ID: -
• Organism: Mannheimia varigena USDA-ARS-USMARC-1296
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 849227..860423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
X808_RS04045 (X808_8000)	-	850497..850730 (+)	234	WP_025217062.1	YgjV family protein	-
X808_RS04050 (X808_8010)	radA	850784..852163 (-)	1380	WP_025217063.1	DNA repair protein RadA	-
X808_RS04055 (X808_8020)	pilA	852343..852822 (+)	480	WP_025217064.1	prepilin peptidase-dependent pilin	Machinery gene
X808_RS04060 (X808_8030)	pilB	852843..854234 (+)	1392	WP_025217065.1	GspE/PulE family protein	Machinery gene
X808_RS04065 (X808_8040)	pilC	854227..855423 (+)	1197	WP_025217066.1	type II secretion system F family protein	Machinery gene
X808_RS04070 (X808_8050)	-	855427..856083 (+)	657	WP_025217067.1	prepilin peptidase	-
X808_RS04075 (X808_8060)	coaE	856115..856750 (+)	636	WP_025217068.1	dephospho-CoA kinase	-
X808_RS04080 (X808_8070)	yacG	856732..856917 (+)	186	WP_025217069.1	DNA gyrase inhibitor YacG	-
X808_RS04085 (X808_8080)	holA	856918..857940 (-)	1023	WP_025217070.1	DNA polymerase III subunit delta	-
X808_RS04090 (X808_8090)	lptE	857980..858468 (-)	489	WP_025217071.1	LPS assembly lipoprotein LptE	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45708.20 Da
• Isoelectric Point: 9.1619

>NTDB_id=115050 X808_RS04065 WP_025217066.1 854227..855423(+) (pilC) [Mannheimia varigena USDA-ARS-USMARC-1296]
MAKIYEFHWKAVDRFQQKRKGRLLSSNREELENRLLTKGYQQIRISRNFVFSQNPKREEISQFLAQLALLVNSAVPLKQA
LVMILQNCRNIELHLWLSELIQLIESGYAFSQSLERLNKFIANQEIQLIKMGEQSGKLGLILTNLAESRLKSDKLAKKVK
KILFYPAIVLFISFSLSIGLLVFIVPQFAELYGTKEQALPLITEILFSLSQCLIEQKNLLFSLFLLAVIFFLFFAKRENW
AAKLKISVLSKLPVFRQIIEQARIVFFSQNIALMLNAHIPLDVALKSFLSEKSDDPILQKEVEFMLNLLQQGYKFSQGIN
SNVFGLDMLQMIEIGEQSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLLMGVIVGTIIVGLYLPIFDMGSLVE

Nucleotide

• Length: 1197 bp

>NTDB_id=115050 X808_RS04065 WP_025217066.1 854227..855423(+) (pilC) [Mannheimia varigena USDA-ARS-USMARC-1296]
ATGGCTAAAATCTATGAGTTTCATTGGAAGGCGGTAGATCGTTTTCAACAAAAACGTAAGGGCAGATTATTATCTTCAAA
CAGAGAAGAGCTTGAAAATAGATTACTTACTAAAGGTTATCAGCAAATTCGCATTAGCCGAAACTTTGTGTTTTCACAAA
ACCCTAAAAGAGAAGAAATTAGTCAATTTCTCGCTCAGCTTGCTTTGTTGGTTAATTCTGCTGTACCGTTAAAACAAGCC
TTAGTAATGATTTTACAAAACTGTCGAAATATTGAGCTTCATCTATGGCTAAGCGAGCTTATTCAACTCATTGAAAGTGG
TTATGCTTTTTCACAATCATTAGAACGGCTCAATAAATTTATCGCTAACCAAGAAATTCAACTGATTAAAATGGGCGAGC
AGAGCGGAAAACTTGGTTTGATTTTAACCAACTTGGCGGAGAGCAGACTTAAATCGGATAAACTGGCTAAAAAAGTCAAG
AAAATCCTGTTTTATCCAGCAATTGTACTGTTTATCTCATTCTCTCTTTCTATCGGACTTTTGGTATTCATCGTGCCACA
ATTTGCCGAACTTTACGGCACAAAAGAACAAGCCTTACCGCTGATTACTGAGATTTTATTTTCTCTTTCTCAATGTTTGA
TTGAACAGAAGAATCTTTTATTCAGTTTATTTTTACTAGCGGTTATTTTTTTCTTATTTTTTGCAAAAAGAGAGAATTGG
GCAGCGAAATTGAAAATCAGCGTATTGTCTAAGCTCCCTGTTTTTAGACAAATTATAGAGCAAGCTCGCATTGTCTTTTT
TAGCCAAAATATTGCGTTGATGTTGAATGCTCATATTCCATTAGATGTCGCATTAAAATCCTTTTTATCTGAAAAAAGTG
ATGACCCTATATTACAAAAAGAAGTTGAGTTTATGCTCAATCTCTTACAACAAGGCTATAAGTTTTCGCAAGGTATCAAC
TCAAATGTGTTTGGCTTAGATATGCTTCAGATGATTGAGATAGGCGAACAGAGCGGTAATGTTGCTAAAATGTGTGAGCA
TATTAGCGAGATGTATCAACAAAAACTGGATTATCAAATTGATATTCTCTCCCAATTATTAGAGCCAATGCTGATGCTAT
TAATGGGCGTAATTGTCGGCACTATTATTGTTGGGCTGTACTTGCCTATTTTCGATATGGGCTCATTGGTGGAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	56.11	100	0.565
pilC	Haemophilus influenzae Rd KW20	42.643	100	0.43
pilC	Haemophilus influenzae 86-028NP	41.646	100	0.42