Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | X808_RS04055 | Genome accession | NZ_CP006943 |
| Coordinates | 852343..852822 (+) | Length | 159 a.a. |
| NCBI ID | WP_025217064.1 | Uniprot ID | W0QBW2 |
| Organism | Mannheimia varigena USDA-ARS-USMARC-1296 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 847343..857822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| X808_RS04035 (X808_7980) | - | 848247..848942 (+) | 696 | WP_025217060.1 | amino acid racemase | - |
| X808_RS04040 (X808_7990) | - | 848960..850270 (+) | 1311 | WP_025217061.1 | anaerobic C4-dicarboxylate transporter | - |
| X808_RS04045 (X808_8000) | - | 850497..850730 (+) | 234 | WP_025217062.1 | YgjV family protein | - |
| X808_RS04050 (X808_8010) | radA | 850784..852163 (-) | 1380 | WP_025217063.1 | DNA repair protein RadA | - |
| X808_RS04055 (X808_8020) | pilA | 852343..852822 (+) | 480 | WP_025217064.1 | prepilin peptidase-dependent pilin | Machinery gene |
| X808_RS04060 (X808_8030) | pilB | 852843..854234 (+) | 1392 | WP_025217065.1 | GspE/PulE family protein | Machinery gene |
| X808_RS04065 (X808_8040) | pilC | 854227..855423 (+) | 1197 | WP_025217066.1 | type II secretion system F family protein | Machinery gene |
| X808_RS04070 (X808_8050) | - | 855427..856083 (+) | 657 | WP_025217067.1 | prepilin peptidase | - |
| X808_RS04075 (X808_8060) | coaE | 856115..856750 (+) | 636 | WP_025217068.1 | dephospho-CoA kinase | - |
| X808_RS04080 (X808_8070) | yacG | 856732..856917 (+) | 186 | WP_025217069.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17107.53 Da Isoelectric Point: 9.0783
>NTDB_id=115048 X808_RS04055 WP_025217064.1 852343..852822(+) (pilA) [Mannheimia varigena USDA-ARS-USMARC-1296]
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=115048 X808_RS04055 WP_025217064.1 852343..852822(+) (pilA) [Mannheimia varigena USDA-ARS-USMARC-1296]
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCTATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGAAATGAAACTAAATATCTCAATTCGATTACTGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCTATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGAAATGAAACTAAATATCTCAATTCGATTACTGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
65.409 |
100 |
0.654 |
| pilA | Haemophilus influenzae 86-028NP |
57.746 |
89.308 |
0.516 |
| pilA | Haemophilus influenzae Rd KW20 |
55.634 |
89.308 |
0.497 |