Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | HUW69_RS01445 | Genome accession | NZ_LT992490 |
| Coordinates | 322379..322963 (+) | Length | 194 a.a. |
| NCBI ID | WP_029627684.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 4295STDY6534200 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 317379..327963
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUW69_RS01430 (SAMEA4374365_00295) | oxyR | 317734..318627 (+) | 894 | WP_001025911.1 | DNA-binding transcriptional regulator OxyR | - |
| HUW69_RS01435 (SAMEA4374365_00296) | - | 318753..321230 (-) | 2478 | WP_029627686.1 | penicillin-binding protein 1A | - |
| HUW69_RS01440 (SAMEA4374365_00297) | pilM | 321373..322389 (+) | 1017 | WP_029627685.1 | type IV pilus assembly protein PilM | Machinery gene |
| HUW69_RS01445 (SAMEA4374365_00298) | pilN | 322379..322963 (+) | 585 | WP_029627684.1 | PilN domain-containing protein | Machinery gene |
| HUW69_RS01450 (SAMEA4374365_00299) | pilO | 322956..323546 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| HUW69_RS01455 (SAMEA4374365_00300) | pilP | 323536..324054 (+) | 519 | WP_029627683.1 | pilus assembly protein PilP | Machinery gene |
| HUW69_RS01460 (SAMEA4374365_00301) | pilQ | 324080..325795 (+) | 1716 | WP_032480167.1 | type IV pilus secretin PilQ | Machinery gene |
| HUW69_RS01465 (SAMEA4374365_00302) | aroK | 325982..326506 (+) | 525 | WP_000818615.1 | shikimate kinase AroK | - |
| HUW69_RS01470 (SAMEA4374365_00303) | aroB | 326534..327619 (+) | 1086 | WP_000439813.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22069.51 Da Isoelectric Point: 9.6910
>NTDB_id=1150258 HUW69_RS01445 WP_029627684.1 322379..322963(+) (pilN) [Vibrio cholerae strain 4295STDY6534200]
MLHKVNLLPWRDARREAHKKRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFALDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTEVEMHEIV
SGNKRFGKQFQSFKVSFKVLNPTSNSQDGEAHNG
MLHKVNLLPWRDARREAHKKRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFALDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTEVEMHEIV
SGNKRFGKQFQSFKVSFKVLNPTSNSQDGEAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=1150258 HUW69_RS01445 WP_029627684.1 322379..322963(+) (pilN) [Vibrio cholerae strain 4295STDY6534200]
ATGTTGCATAAGGTTAACTTACTGCCGTGGCGTGATGCGCGGCGTGAAGCACATAAAAAGCGTTTTTTAGGGCTAGTGAC
ACTCGGTGTTTTGCTGGCAGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GCATTGGTTATTTGCAACAACATATCTTCGCGCTGGATCAGCAGATCGCCAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGCTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAAATAGAAATAACCGGGATCAGCGATT
CCACTGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGAAGTTGAAATGCATGAAATCGTT
TCAGGAAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTTAAAGTTTTAAACCCAACCTCTAACTCACA
AGATGGGGAGGCACATAATGGCTAG
ATGTTGCATAAGGTTAACTTACTGCCGTGGCGTGATGCGCGGCGTGAAGCACATAAAAAGCGTTTTTTAGGGCTAGTGAC
ACTCGGTGTTTTGCTGGCAGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GCATTGGTTATTTGCAACAACATATCTTCGCGCTGGATCAGCAGATCGCCAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGCTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAAATAGAAATAACCGGGATCAGCGATT
CCACTGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGAAGTTGAAATGCATGAAATCGTT
TCAGGAAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTTAAAGTTTTAAACCCAACCTCTAACTCACA
AGATGGGGAGGCACATAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
94.845 |
100 |
0.948 |
| pilN | Vibrio campbellii strain DS40M4 |
59.322 |
91.237 |
0.541 |