Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DXE36_RS14830 | Genome accession | NZ_LT992469 |
| Coordinates | 2859508..2859978 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus isolate 15_LA_305 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2848190..2870862 | 2859508..2859978 | within | 0 |
Gene organization within MGE regions
Location: 2848190..2870862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXE36_RS14735 | - | 2848190..2849227 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| DXE36_RS14740 | - | 2849400..2849939 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| DXE36_RS14745 | - | 2850079..2850246 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| DXE36_RS14750 | - | 2850317..2850502 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| DXE36_RS15035 | - | 2850499..2850645 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| DXE36_RS14755 | - | 2850719..2851573 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| DXE36_RS14760 | - | 2851585..2852301 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| DXE36_RS14765 | - | 2852465..2852707 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| DXE36_RS14770 | - | 2852720..2853163 (+) | 444 | WP_001662741.1 | hypothetical protein | - |
| DXE36_RS14775 | - | 2853178..2853318 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| DXE36_RS14780 | - | 2853311..2853520 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| DXE36_RS14785 | - | 2853577..2854326 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| DXE36_RS14790 | - | 2854339..2854599 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| DXE36_RS15215 | - | 2854623..2854778 (-) | 156 | Protein_2778 | hypothetical protein | - |
| DXE36_RS14795 | - | 2854832..2855152 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| DXE36_RS14800 | - | 2855149..2855310 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| DXE36_RS14805 | - | 2855403..2855663 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| DXE36_RS14810 | - | 2855672..2855935 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| DXE36_RS14815 | - | 2855932..2857887 (+) | 1956 | WP_174220587.1 | AAA family ATPase | - |
| DXE36_RS14820 | - | 2857889..2858809 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| DXE36_RS14825 | - | 2858890..2859507 (+) | 618 | WP_072460574.1 | MBL fold metallo-hydrolase | - |
| DXE36_RS14830 | ssbA | 2859508..2859978 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| DXE36_RS14835 | - | 2860008..2860892 (+) | 885 | WP_061741412.1 | DnaD domain protein | - |
| DXE36_RS14840 | - | 2860899..2861117 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| DXE36_RS14845 | - | 2861126..2861530 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DXE36_RS14850 | - | 2861543..2861911 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| DXE36_RS14855 | - | 2861915..2862157 (+) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| DXE36_RS14860 | - | 2862172..2862420 (+) | 249 | WP_001065039.1 | DUF1024 family protein | - |
| DXE36_RS14865 | - | 2862413..2862949 (+) | 537 | WP_000185671.1 | dUTPase | - |
| DXE36_RS14870 | - | 2862986..2863192 (+) | 207 | WP_000195794.1 | DUF1381 domain-containing protein | - |
| DXE36_RS14875 | - | 2863189..2863392 (+) | 204 | WP_000141180.1 | hypothetical protein | - |
| DXE36_RS14880 | - | 2863385..2863621 (+) | 237 | WP_114665715.1 | DUF7366 family protein | - |
| DXE36_RS14885 | - | 2863611..2864000 (+) | 390 | WP_001596346.1 | hypothetical protein | - |
| DXE36_RS14890 | rinB | 2863997..2864146 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| DXE36_RS14895 | - | 2864305..2864955 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| DXE36_RS14900 | - | 2864955..2865155 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| DXE36_RS14905 | - | 2865183..2865599 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| DXE36_RS14910 | - | 2865831..2866130 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
| DXE36_RS14915 | - | 2866261..2866605 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| DXE36_RS14920 | - | 2866602..2868264 (+) | 1663 | Protein_2804 | terminase large subunit domain-containing protein | - |
| DXE36_RS14925 | - | 2868280..2869467 (+) | 1188 | WP_000025274.1 | phage portal protein | - |
| DXE36_RS14930 | - | 2869451..2870188 (+) | 738 | WP_000642728.1 | head maturation protease, ClpP-related | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=1149797 DXE36_RS14830 WP_000934770.1 2859508..2859978(+) (ssbA) [Staphylococcus aureus isolate 15_LA_305]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1149797 DXE36_RS14830 WP_000934770.1 2859508..2859978(+) (ssbA) [Staphylococcus aureus isolate 15_LA_305]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |