Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DXE47_RS03340 Genome accession   NZ_LT992468
Coordinates   562220..562690 (-) Length   156 a.a.
NCBI ID   WP_000934759.1    Uniprot ID   A0A2I7Y8V1
Organism   Staphylococcus aureus isolate 12_LA_293     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 557220..567690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE47_RS03270 rinB 557508..557657 (-) 150 WP_000595265.1 transcriptional activator RinB -
  DXE47_RS03275 - 557657..558043 (-) 387 WP_001555739.1 hypothetical protein -
  DXE47_RS03280 - 558033..558269 (-) 237 WP_000608273.1 DUF7366 family protein -
  DXE47_RS03285 - 558262..558465 (-) 204 WP_001072795.1 hypothetical protein -
  DXE47_RS03290 - 558462..558656 (-) 195 WP_000132920.1 hypothetical protein -
  DXE47_RS03295 - 558653..558859 (-) 207 WP_000195779.1 DUF1381 domain-containing protein -
  DXE47_RS03300 - 558876..559049 (-) 174 WP_001209216.1 hypothetical protein -
  DXE47_RS03305 - 559086..559622 (-) 537 WP_000185680.1 dUTPase -
  DXE47_RS03310 - 559615..559863 (-) 249 WP_114621462.1 DUF1024 family protein -
  DXE47_RS15330 - 559856..560029 (-) 174 WP_001794871.1 hypothetical protein -
  DXE47_RS03315 - 560035..560283 (-) 249 WP_042905000.1 phi PVL orf 51-like protein -
  DXE47_RS03320 - 560284..560655 (-) 372 WP_114621463.1 SA1788 family PVL leukocidin-associated protein -
  DXE47_RS03325 - 560668..561072 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  DXE47_RS03330 - 561081..561299 (-) 219 WP_000338530.1 hypothetical protein -
  DXE47_RS03335 - 561306..562190 (-) 885 WP_000148300.1 DnaD domain protein -
  DXE47_RS03340 ssbA 562220..562690 (-) 471 WP_000934759.1 single-stranded DNA-binding protein Machinery gene
  DXE47_RS03345 - 562691..563308 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  DXE47_RS03350 - 563389..564309 (-) 921 WP_000138475.1 recombinase RecT -
  DXE47_RS03355 - 564311..566254 (-) 1944 WP_031928235.1 AAA family ATPase -
  DXE47_RS03360 - 566263..566526 (-) 264 WP_001205732.1 hypothetical protein -
  DXE47_RS03365 - 566535..566795 (-) 261 WP_031807558.1 DUF1108 family protein -
  DXE47_RS03370 - 566799..567101 (-) 303 WP_031807559.1 DUF2482 family protein -
  DXE47_RS03375 - 567194..567355 (-) 162 WP_000066014.1 DUF1270 domain-containing protein -
  DXE47_RS03380 - 567352..567672 (-) 321 WP_001120935.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=1149728 DXE47_RS03340 WP_000934759.1 562220..562690(-) (ssbA) [Staphylococcus aureus isolate 12_LA_293]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1149728 DXE47_RS03340 WP_000934759.1 562220..562690(-) (ssbA) [Staphylococcus aureus isolate 12_LA_293]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCGGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment