Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | W903_RS08325 | Genome accession | NZ_CP006910 |
| Coordinates | 1633296..1633787 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609586.1 | Uniprot ID | A0AAD2WUV1 |
| Organism | Streptococcus agalactiae CNCTC 10/84 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1628296..1638787
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| W903_RS08310 (W903_1699) | - | 1631202..1631873 (-) | 672 | WP_000174848.1 | DUF1129 domain-containing protein | - |
| W903_RS08315 (W903_1700) | - | 1631898..1632842 (-) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| W903_RS08320 (W903_1701) | rpsR | 1633012..1633251 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| W903_RS08325 (W903_1702) | ssb | 1633296..1633787 (-) | 492 | WP_000609586.1 | single-stranded DNA-binding protein | Machinery gene |
| W903_RS08330 (W903_1703) | rpsF | 1633799..1634086 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| W903_RS08335 (W903_1704) | mutY | 1635149..1636303 (+) | 1155 | WP_162473108.1 | A/G-specific adenine glycosylase | - |
| W903_RS08340 (W903_1705) | - | 1636480..1637073 (+) | 594 | WP_000402394.1 | helix-turn-helix domain-containing protein | - |
| W903_RS08345 (W903_1706) | trxA | 1637119..1637451 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| W903_RS08350 (W903_1707) | - | 1637514..1638014 (-) | 501 | WP_000446809.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18155.77 Da Isoelectric Point: 4.9119
>NTDB_id=114962 W903_RS08325 WP_000609586.1 1633296..1633787(-) (ssb) [Streptococcus agalactiae CNCTC 10/84]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=114962 W903_RS08325 WP_000609586.1 1633296..1633787(-) (ssb) [Streptococcus agalactiae CNCTC 10/84]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTCTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTCTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.638 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.286 |
100 |
0.626 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |