Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DXE56_RS11760 Genome accession   NZ_LT992464
Coordinates   2227117..2227620 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus isolate 3_LA_115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2222117..2232620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE56_RS11715 - 2222256..2222837 (-) 582 WP_000158385.1 histidine phosphatase family protein -
  DXE56_RS11720 - 2223015..2223223 (+) 209 Protein_2180 hypothetical protein -
  DXE56_RS11725 - 2223265..2223516 (-) 252 WP_000466741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DXE56_RS11730 - 2223810..2224073 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  DXE56_RS11735 - 2224211..2224783 (-) 573 WP_000769718.1 PepSY domain-containing protein -
  DXE56_RS11740 - 2224963..2225331 (-) 369 WP_000849160.1 YxeA family protein -
  DXE56_RS11745 - 2225697..2226011 (-) 315 Protein_2185 exotoxin beta-grasp domain-containing protein -
  DXE56_RS15205 - 2226090..2226366 (+) 277 Protein_2186 site-specific integrase -
  DXE56_RS15390 - 2226359..2226586 (+) 228 Protein_2187 Abi family protein -
  DXE56_RS11755 rpsR 2226823..2227065 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  DXE56_RS11760 ssbA 2227117..2227620 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  DXE56_RS11765 rpsF 2227641..2227937 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  DXE56_RS11775 - 2228181..2228372 (+) 192 WP_001052481.1 hypothetical protein -
  DXE56_RS11780 ychF 2228458..2229555 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  DXE56_RS11785 - 2229567..2229770 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  DXE56_RS11790 - 2229800..2230681 (-) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  DXE56_RS11795 - 2230835..2231680 (-) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1149573 DXE56_RS11760 WP_000934799.1 2227117..2227620(-) (ssbA) [Staphylococcus aureus isolate 3_LA_115]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1149573 DXE56_RS11760 WP_000934799.1 2227117..2227620(-) (ssbA) [Staphylococcus aureus isolate 3_LA_115]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment