Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DXE56_RS03015 | Genome accession | NZ_LT992464 |
| Coordinates | 557218..557688 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus isolate 3_LA_115 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 535602..586101 | 557218..557688 | within | 0 |
Gene organization within MGE regions
Location: 535602..586101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXE56_RS02860 | groES | 535602..535886 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| DXE56_RS02865 | groL | 535962..537578 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| DXE56_RS02870 | - | 538119..538298 (+) | 180 | WP_000201398.1 | hypothetical protein | - |
| DXE56_RS15035 | - | 538295..538921 (+) | 627 | WP_000216896.1 | hypothetical protein | - |
| DXE56_RS02890 | - | 539460..540767 (-) | 1308 | WP_001045074.1 | TrkH family potassium uptake protein | - |
| DXE56_RS02900 | - | 541150..542373 (-) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| DXE56_RS02905 | - | 542805..543860 (+) | 1056 | WP_000791397.1 | leukocidin family pore-forming toxin | - |
| DXE56_RS02910 | - | 543882..544898 (+) | 1017 | WP_000595612.1 | leukocidin/hemolysin toxin family protein | - |
| DXE56_RS02915 | sph | 545160..545984 (-) | 825 | Protein_542 | sphingomyelin phosphodiesterase | - |
| DXE56_RS02920 | - | 546041..547078 (-) | 1038 | WP_001814397.1 | tyrosine-type recombinase/integrase | - |
| DXE56_RS02925 | - | 547271..547975 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| DXE56_RS02930 | - | 548115..548282 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| DXE56_RS02935 | - | 548438..549136 (-) | 699 | WP_000837517.1 | potassium channel family protein | - |
| DXE56_RS02945 | - | 549318..549950 (-) | 633 | WP_031763806.1 | LexA family transcriptional regulator | - |
| DXE56_RS02950 | - | 550104..550331 (+) | 228 | WP_000192116.1 | helix-turn-helix transcriptional regulator | - |
| DXE56_RS02955 | - | 550354..551142 (+) | 789 | WP_031763800.1 | phage antirepressor | - |
| DXE56_RS02960 | - | 551159..551356 (+) | 198 | WP_061651380.1 | hypothetical protein | - |
| DXE56_RS02965 | - | 551387..551527 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| DXE56_RS02970 | - | 551542..552174 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| DXE56_RS02975 | - | 552233..552553 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| DXE56_RS02980 | - | 552550..552711 (+) | 162 | WP_000066017.1 | DUF1270 domain-containing protein | - |
| DXE56_RS02985 | - | 552806..553132 (+) | 327 | WP_000165375.1 | DUF2482 family protein | - |
| DXE56_RS02990 | - | 553113..553373 (+) | 261 | WP_000291503.1 | DUF1108 family protein | - |
| DXE56_RS02995 | - | 553382..553645 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| DXE56_RS03000 | - | 553654..555597 (+) | 1944 | WP_000700577.1 | AAA family ATPase | - |
| DXE56_RS03005 | - | 555599..556519 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| DXE56_RS03010 | - | 556600..557217 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| DXE56_RS03015 | ssbA | 557218..557688 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| DXE56_RS03020 | - | 557718..558602 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| DXE56_RS03025 | - | 558609..558827 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| DXE56_RS03030 | - | 558836..559240 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DXE56_RS03035 | - | 559253..559621 (+) | 369 | WP_114621361.1 | SA1788 family PVL leukocidin-associated protein | - |
| DXE56_RS03040 | - | 559625..559780 (+) | 156 | Protein_566 | SAV1978 family virulence-associated passenger protein | - |
| DXE56_RS03045 | - | 559788..560252 (+) | 465 | WP_078068207.1 | dUTP diphosphatase | - |
| DXE56_RS03050 | - | 560289..560495 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| DXE56_RS03055 | - | 560492..560878 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| DXE56_RS03060 | rinB | 560875..561024 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| DXE56_RS03065 | - | 561024..561224 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| DXE56_RS03070 | - | 561252..561668 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| DXE56_RS03075 | - | 561900..562199 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
| DXE56_RS03080 | - | 562329..562673 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| DXE56_RS03085 | - | 562670..564331 (+) | 1662 | WP_000625096.1 | terminase large subunit | - |
| DXE56_RS03090 | - | 564347..565534 (+) | 1188 | WP_000025266.1 | phage portal protein | - |
| DXE56_RS03095 | - | 565518..566255 (+) | 738 | WP_000861912.1 | head maturation protease, ClpP-related | - |
| DXE56_RS03100 | - | 566278..567423 (+) | 1146 | WP_031897300.1 | phage major capsid protein | - |
| DXE56_RS03105 | - | 567443..567727 (+) | 285 | WP_000238236.1 | hypothetical protein | - |
| DXE56_RS03110 | - | 567717..568001 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| DXE56_RS03115 | - | 567985..568347 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| DXE56_RS03120 | - | 568344..568748 (+) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| DXE56_RS03125 | - | 568745..569152 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| DXE56_RS03130 | - | 569153..569797 (+) | 645 | WP_000268736.1 | major tail protein | - |
| DXE56_RS03135 | - | 569851..570063 (+) | 213 | WP_078101489.1 | Ig-like domain-containing protein | - |
| DXE56_RS03140 | gpG | 570113..570463 (+) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| DXE56_RS15040 | gpGT | 570514..570651 (+) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| DXE56_RS03145 | - | 570708..575237 (+) | 4530 | WP_062832901.1 | phage tail tape measure protein | - |
| DXE56_RS03150 | - | 575234..576718 (+) | 1485 | WP_062832900.1 | phage distal tail protein | - |
| DXE56_RS03155 | - | 576734..580519 (+) | 3786 | WP_062832899.1 | phage tail spike protein | - |
| DXE56_RS03160 | - | 580509..580661 (+) | 153 | WP_001153681.1 | hypothetical protein | - |
| DXE56_RS03165 | - | 580708..580995 (+) | 288 | WP_001040261.1 | hypothetical protein | - |
| DXE56_RS03170 | - | 581053..581349 (+) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| DXE56_RS03175 | pepG1 | 581541..581675 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| DXE56_RS03180 | - | 581728..581835 (-) | 108 | WP_001791821.1 | hypothetical protein | - |
| DXE56_RS03185 | - | 581887..582141 (+) | 255 | WP_000611512.1 | phage holin | - |
| DXE56_RS03190 | - | 582153..582908 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| DXE56_RS03195 | sak | 583098..583589 (+) | 492 | WP_000920041.1 | staphylokinase | - |
| DXE56_RS03210 | - | 584187..584524 (+) | 338 | Protein_599 | SH3 domain-containing protein | - |
| DXE56_RS03215 | - | 584619..585068 (-) | 450 | WP_000727645.1 | chemotaxis-inhibiting protein CHIPS | - |
| DXE56_RS03220 | scn | 585751..586101 (+) | 351 | WP_000702262.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=1149537 DXE56_RS03015 WP_000934770.1 557218..557688(+) (ssbA) [Staphylococcus aureus isolate 3_LA_115]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1149537 DXE56_RS03015 WP_000934770.1 557218..557688(+) (ssbA) [Staphylococcus aureus isolate 3_LA_115]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |