Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DXE65_RS06520 Genome accession   NZ_LT992462
Coordinates   1249707..1250210 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus isolate 5_3949     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1244707..1255210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE65_RS06475 - 1244846..1245427 (-) 582 WP_000158385.1 histidine phosphatase family protein -
  DXE65_RS06480 - 1245605..1245813 (+) 209 Protein_1227 hypothetical protein -
  DXE65_RS06485 - 1245855..1246106 (-) 252 WP_000466741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DXE65_RS06490 - 1246400..1246663 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  DXE65_RS06495 - 1246801..1247373 (-) 573 WP_000769718.1 PepSY domain-containing protein -
  DXE65_RS06500 - 1247553..1247921 (-) 369 WP_000849160.1 YxeA family protein -
  DXE65_RS06505 - 1248287..1248601 (-) 315 Protein_1232 exotoxin beta-grasp domain-containing protein -
  DXE65_RS15610 - 1248680..1248956 (+) 277 Protein_1233 site-specific integrase -
  DXE65_RS15960 - 1248949..1249176 (+) 228 Protein_1234 Abi family protein -
  DXE65_RS06515 rpsR 1249413..1249655 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  DXE65_RS06520 ssbA 1249707..1250210 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  DXE65_RS06525 rpsF 1250231..1250527 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  DXE65_RS06535 - 1250771..1250962 (+) 192 WP_001052481.1 hypothetical protein -
  DXE65_RS06540 ychF 1251048..1252145 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  DXE65_RS06545 - 1252157..1252360 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  DXE65_RS06550 - 1252390..1253271 (-) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  DXE65_RS06555 - 1253425..1254270 (-) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1149461 DXE65_RS06520 WP_000934799.1 1249707..1250210(-) (ssbA) [Staphylococcus aureus isolate 5_3949]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1149461 DXE65_RS06520 WP_000934799.1 1249707..1250210(-) (ssbA) [Staphylococcus aureus isolate 5_3949]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment