Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DXE39_RS01175 Genome accession   NZ_LT992460
Coordinates   212763..213233 (-) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 9_LA_281     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 207763..218233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE39_RS01110 - 208038..208454 (-) 417 WP_000590122.1 hypothetical protein -
  DXE39_RS01115 - 208482..208682 (-) 201 WP_000265043.1 DUF1514 family protein -
  DXE39_RS01120 rinB 208682..208831 (-) 150 WP_000595265.1 transcriptional activator RinB -
  DXE39_RS01125 - 208828..209214 (-) 387 WP_000592207.1 hypothetical protein -
  DXE39_RS01130 - 209211..209417 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  DXE39_RS01135 - 209454..209996 (-) 543 WP_114647895.1 dUTP diphosphatase -
  DXE39_RS01140 - 209989..210171 (-) 183 WP_000028422.1 hypothetical protein -
  DXE39_RS01145 - 210161..210412 (-) 252 WP_001065091.1 DUF1024 family protein -
  DXE39_RS15175 - 210405..210572 (-) 168 WP_001624242.1 hypothetical protein -
  DXE39_RS01150 - 210584..210826 (-) 243 WP_000131381.1 phi PVL orf 51-like protein -
  DXE39_RS01155 - 210830..211198 (-) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  DXE39_RS01160 - 211211..211615 (-) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  DXE39_RS01165 - 211624..211842 (-) 219 WP_000338528.1 hypothetical protein -
  DXE39_RS01170 - 211849..212733 (-) 885 WP_000148298.1 DnaD domain protein -
  DXE39_RS01175 ssbA 212763..213233 (-) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  DXE39_RS01180 - 213234..213851 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  DXE39_RS01185 - 213932..214852 (-) 921 WP_000138475.1 recombinase RecT -
  DXE39_RS01190 - 214854..216809 (-) 1956 WP_064127293.1 AAA family ATPase -
  DXE39_RS01195 - 216806..217069 (-) 264 WP_114647896.1 hypothetical protein -
  DXE39_RS01200 - 217078..217338 (-) 261 WP_000291488.1 DUF1108 family protein -
  DXE39_RS01205 - 217431..217592 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  DXE39_RS01210 - 217589..217909 (-) 321 WP_001120936.1 DUF771 domain-containing protein -
  DXE39_RS15255 - 217963..218118 (+) 156 Protein_234 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=1149356 DXE39_RS01175 WP_000934770.1 212763..213233(-) (ssbA) [Staphylococcus aureus isolate 9_LA_281]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1149356 DXE39_RS01175 WP_000934770.1 212763..213233(-) (ssbA) [Staphylococcus aureus isolate 9_LA_281]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment