Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DYY92_RS05290 Genome accession   NZ_LT992434
Coordinates   1015705..1016175 (-) Length   156 a.a.
NCBI ID   WP_115657069.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-WT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1010705..1021175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY92_RS05225 - 1010904..1011320 (-) 417 WP_000590122.1 hypothetical protein -
  DYY92_RS05230 - 1011348..1011548 (-) 201 WP_001622114.1 DUF1514 family protein -
  DYY92_RS05235 rinB 1011548..1011697 (-) 150 WP_000595265.1 transcriptional activator RinB -
  DYY92_RS05240 - 1011694..1012080 (-) 387 WP_000592207.1 hypothetical protein -
  DYY92_RS05245 - 1012077..1012283 (-) 207 WP_076686084.1 DUF1381 domain-containing protein -
  DYY92_RS05250 - 1012280..1012525 (-) 246 WP_001282074.1 hypothetical protein -
  DYY92_RS05255 - 1012562..1013098 (-) 537 WP_001066447.1 dUTP diphosphatase -
  DYY92_RS14045 - 1013091..1013261 (-) 171 WP_000714403.1 hypothetical protein -
  DYY92_RS05260 - 1013248..1013502 (-) 255 WP_001065097.1 DUF1024 family protein -
  DYY92_RS05265 - 1013517..1013759 (-) 243 WP_000131370.1 SAV1978 family virulence-associated passenger protein -
  DYY92_RS05270 - 1013763..1014131 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  DYY92_RS05275 - 1014144..1014548 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  DYY92_RS05280 - 1014557..1014775 (-) 219 WP_000338530.1 hypothetical protein -
  DYY92_RS05285 - 1014782..1015675 (-) 894 WP_115657068.1 DnaD domain protein -
  DYY92_RS05290 ssbA 1015705..1016175 (-) 471 WP_115657069.1 single-stranded DNA-binding protein Machinery gene
  DYY92_RS05295 - 1016176..1016793 (-) 618 WP_073394849.1 MBL fold metallo-hydrolase -
  DYY92_RS05300 - 1016874..1017794 (-) 921 WP_000138475.1 recombinase RecT -
  DYY92_RS05305 - 1017796..1019739 (-) 1944 WP_000700555.1 AAA family ATPase -
  DYY92_RS05310 - 1019748..1020011 (-) 264 WP_001205732.1 hypothetical protein -
  DYY92_RS05315 - 1020020..1020280 (-) 261 WP_000291510.1 DUF1108 family protein -
  DYY92_RS05320 - 1020285..1020587 (-) 303 WP_000165371.1 DUF2482 family protein -
  DYY92_RS05325 - 1020682..1020843 (-) 162 WP_000048129.1 DUF1270 family protein -
  DYY92_RS05330 - 1020840..1021163 (-) 324 WP_001120201.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17640.58 Da        Isoelectric Point: 8.3589

>NTDB_id=1149168 DYY92_RS05290 WP_115657069.1 1015705..1016175(-) (ssbA) [Staphylococcus aureus isolate 1549-WT]
MINRTILVGRLTRDPKLRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1149168 DYY92_RS05290 WP_115657069.1 1015705..1016175(-) (ssbA) [Staphylococcus aureus isolate 1549-WT]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAAAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.622
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372

Multiple sequence alignment