Detailed information NTG1148882

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6H39_RS23480
• Genome accession: NZ_LT963409
• Coordinates: 4944703..4945575 (+)
• Length: 290 a.a.
• NCBI ID: WP_060404277.1
• Uniprot ID: A0AB35R099
• Organism: Pseudomonas syringae isolate CFBP3840
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4939703..4950575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6H39_RS23460	-	4940516..4940839 (+)	324	Protein_4452	DUF1523 family protein	-
C6H39_RS23465 (CFBP3840_04550)	-	4941135..4941563 (-)	429	WP_060404275.1	pilin	-
C6H39_RS23470 (CFBP3840_04551)	pilB	4941787..4943481 (+)	1695	WP_060404276.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C6H39_RS23475 (CFBP3840_04552)	pilC	4943484..4944701 (+)	1218	WP_054995403.1	type II secretion system F family protein	Machinery gene
C6H39_RS23480 (CFBP3840_04553)	pilD	4944703..4945575 (+)	873	WP_060404277.1	prepilin peptidase	Machinery gene
C6H39_RS23485 (CFBP3840_04554)	coaE	4945572..4946195 (+)	624	WP_057422075.1	dephospho-CoA kinase	-
C6H39_RS23490 (CFBP3840_04555)	yacG	4946192..4946401 (+)	210	WP_060404278.1	DNA gyrase inhibitor YacG	-
C6H39_RS23495	-	4946551..4946997 (-)	447	WP_099456531.1	hypothetical protein	-
C6H39_RS23500 (CFBP3840_04556)	-	4947101..4948573 (-)	1473	WP_060404279.1	tetratricopeptide repeat protein	-
C6H39_RS23505 (CFBP3840_04557)	-	4948570..4948956 (-)	387	WP_223282982.1	hypothetical protein	-
C6H39_RS23510 (CFBP3840_04558)	-	4949000..4949629 (+)	630	WP_002553210.1	DUF1780 domain-containing protein	-
C6H39_RS23515 (CFBP3840_04559)	-	4949626..4950159 (+)	534	WP_060404280.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32057.19 Da
• Isoelectric Point: 8.5797

>NTDB_id=1148882 C6H39_RS23480 WP_060404277.1 4944703..4945575(+) (pilD) [Pseudomonas syringae isolate CFBP3840]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRLPKMMERDWKAQSRELLGLPAEPDQPAFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIINAFGLFNSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPFTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1148882 C6H39_RS23480 WP_060404277.1 4944703..4945575(+) (pilD) [Pseudomonas syringae isolate CFBP3840]
ATGCCCCTCCTCGACCTACTGGCCAGCTCCCCTCTGGCCTTCGTCACCACCTGCTGCATCCTCGGCCTCATCATCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTTCCCAAAATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAACTGCTCGGCC
TGCCCGCAGAACCCGACCAGCCTGCCTTCAACCTGAACCGCCCTCGCTCAAGCTGCCCGCACTGCGCGCACAAGATCCGC
CCGTGGGAGAACCTGCCGGTCATCAGCTATCTGCTGCTGCGCGGTAAATGCTCACAATGCAAAGCCCCCATCAGCAAACG
CTACCCATTGGTAGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCAGCGG
CGATGCTGGTGTTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGACCACCAGCTGTTACCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCATCAACGCCTTCGGGCTATTCAACTCGCTGAACGATGCGCTGTGGGGTGCAGT
GGCCGGGTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTTGGCGCATGGGGCGGCTGGCAGATTCTGCCGTTTACCATCCTGCTGTCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.521	97.931	0.524
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	51.46	94.483	0.486
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476