Detailed information NTG1148866

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: C6H39_RS03450
• Genome accession: NZ_LT963409
• Coordinates: 700638..701201 (+)
• Length: 187 a.a.
• NCBI ID: WP_002555458.1
• Uniprot ID: -
• Organism: Pseudomonas syringae isolate CFBP3840
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	700638..713337	700638..701201	within	0

Gene organization within MGE regions

Location: 700638..713337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6H39_RS03450 (CFBP3840_00654)	ssb	700638..701201 (+)	564	WP_002555458.1	single-stranded DNA-binding protein	Machinery gene
C6H39_RS32260 (CFBP3840_00655)	-	701334..701588 (+)	255	WP_231994923.1	hypothetical protein	-
C6H39_RS32265 (CFBP3840_00656)	-	701807..702619 (+)	813	WP_231994924.1	site-specific integrase	-
C6H39_RS03460 (CFBP3840_00657)	-	702612..704012 (+)	1401	WP_060402997.1	site-specific integrase	-
C6H39_RS03470	-	704175..704276 (-)	102	Protein_633	helix-turn-helix domain-containing protein	-
C6H39_RS03475 (CFBP3840_00659)	xopD	704458..706713 (+)	2256	WP_057425783.1	Ulp1 family type III secretion system effector isopeptidase XopD	-
C6H39_RS03480 (CFBP3840_00660)	-	706861..707358 (-)	498	Protein_635	IS5 family transposase	-
C6H39_RS03485	-	707376..708525 (-)	1150	Protein_636	IS3 family transposase	-
C6H39_RS32145	-	708566..708904 (-)	339	WP_058886618.1	hypothetical protein	-
C6H39_RS03495 (CFBP3840_00664)	-	709611..710723 (-)	1113	WP_044323631.1	endo-1,4-beta-xylanase	-
C6H39_RS03500 (CFBP3840_00665)	-	710723..711466 (-)	744	WP_002555452.1	inositol monophosphatase family protein	-
C6H39_RS03505 (CFBP3840_00666)	-	711463..712224 (-)	762	WP_060403202.1	glycerophosphoryl diester phosphodiesterase	-
C6H39_RS03510 (CFBP3840_00667)	-	712231..713337 (-)	1107	WP_002555450.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 187 a.a.
• Molecular weight: 20804.92 Da
• Isoelectric Point: 5.9404

>NTDB_id=1148866 C6H39_RS03450 WP_002555458.1 700638..701201(+) (ssb) [Pseudomonas syringae isolate CFBP3840]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
RDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide

• Length: 564 bp

>NTDB_id=1148866 C6H39_RS03450 WP_002555458.1 700638..701201(+) (ssb) [Pseudomonas syringae isolate CFBP3840]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAACAGAGCGGTCAGAAAGTCGAAAAGACCGAGT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAAGGCGACTCCCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCTCAGCAATCGGCGCCGCAGCAGTCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAG
CGCGACTCGCGCCCGGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTT
CTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (5-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	54.974	100	0.561
ssb	Glaesserella parasuis strain SC1401	47.09	100	0.476
ssb	Neisseria meningitidis MC58	45.161	99.465	0.449
ssb	Neisseria gonorrhoeae MS11	45.161	99.465	0.449