Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C6H38_RS25835 | Genome accession | NZ_LT963402 |
| Coordinates | 5428981..5429550 (-) | Length | 189 a.a. |
| NCBI ID | WP_003426596.1 | Uniprot ID | A0A0K8M6E3 |
| Organism | Pseudomonas syringae pv. avii isolate CFBP3846 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5423981..5434550
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H38_RS25810 (CFBP3846_04952) | - | 5424449..5425555 (+) | 1107 | WP_060411947.1 | ABC transporter ATP-binding protein | - |
| C6H38_RS25815 (CFBP3846_04953) | - | 5425562..5426323 (+) | 762 | WP_060411946.1 | glycerophosphoryl diester phosphodiesterase | - |
| C6H38_RS25820 (CFBP3846_04954) | - | 5426320..5427063 (+) | 744 | WP_060411945.1 | inositol monophosphatase family protein | - |
| C6H38_RS25825 (CFBP3846_04955) | - | 5427182..5428216 (-) | 1035 | WP_162496771.1 | fatty acid desaturase | - |
| C6H38_RS25830 (CFBP3846_04956) | - | 5428463..5428762 (+) | 300 | WP_060411944.1 | hypothetical protein | - |
| C6H38_RS25835 (CFBP3846_04957) | ssb | 5428981..5429550 (-) | 570 | WP_003426596.1 | single-stranded DNA-binding protein | Machinery gene |
| C6H38_RS25840 (CFBP3846_04958) | - | 5429560..5430954 (-) | 1395 | WP_005768949.1 | MFS transporter | - |
| C6H38_RS25845 (CFBP3846_04959) | uvrA | 5431084..5433918 (+) | 2835 | WP_060411943.1 | excinuclease ABC subunit UvrA | - |
| C6H38_RS25850 (CFBP3846_04960) | bfr | 5434012..5434476 (-) | 465 | WP_060411942.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 189 a.a. Molecular weight: 20974.10 Da Isoelectric Point: 5.9404
>NTDB_id=1148831 C6H38_RS25835 WP_003426596.1 5428981..5429550(-) (ssb) [Pseudomonas syringae pv. avii isolate CFBP3846]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 570 bp
>NTDB_id=1148831 C6H38_RS25835 WP_003426596.1 5428981..5429550(-) (ssb) [Pseudomonas syringae pv. avii isolate CFBP3846]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.561 |
| ssb | Glaesserella parasuis strain SC1401 |
47.368 |
100 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
44.681 |
99.471 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.681 |
99.471 |
0.444 |