Detailed information NTG1148781

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C6H34_RS03310
• Genome accession: NZ_LT963395
• Coordinates: 685825..687162 (+)
• Length: 445 a.a.
• NCBI ID: WP_065348988.1
• Uniprot ID: A0A193SJ85
• Organism: Pseudomonas cerasi isolate PL963
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 680825..692162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6H34_RS03285	pgeF	681019..681749 (-)	731	Protein_633	peptidoglycan editing factor PgeF	-
C6H34_RS03290 (PL963_00637)	rluD	681746..682708 (-)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C6H34_RS03295 (PL963_00638)	-	682858..683880 (+)	1023	WP_003371138.1	outer membrane protein assembly factor BamD	-
C6H34_RS03300 (PL963_00639)	-	684001..684240 (+)	240	WP_032609810.1	PP0621 family protein	-
C6H34_RS03305 (PL963_00640)	pilS	684230..685822 (+)	1593	WP_065348989.1	sensor histidine kinase	Regulator
C6H34_RS03310 (PL963_00641)	pilR	685825..687162 (+)	1338	WP_065348988.1	sigma-54-dependent transcriptional regulator	Regulator
C6H34_RS03315 (PL963_00642)	thiO	687292..688395 (-)	1104	WP_065348987.1	glycine oxidase ThiO	-
C6H34_RS03320 (PL963_00643)	-	688421..688822 (-)	402	WP_065348986.1	type IV pilin protein	-
C6H34_RS03325 (PL963_00644)	-	688834..692031 (-)	3198	WP_065348985.1	pilus assembly protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49734.72 Da
• Isoelectric Point: 6.2986

>NTDB_id=1148781 C6H34_RS03310 WP_065348988.1 685825..687162(+) (pilR) [Pseudomonas cerasi isolate PL963]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPNLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=1148781 C6H34_RS03310 WP_065348988.1 685825..687162(+) (pilR) [Pseudomonas cerasi isolate PL963]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACCCGCAGTGCCCGTAACGTCGCCGAAGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTTTGCCTGACGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATCTGGACACGGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAACAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGTCAGCAAGAGCAGATTGT
CGACGTACGTATTCTGTGTGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTTCGTCAGGATCTTTATT
ACCGATTGAACGTGATCGAAGTGCGTGTGCCCCCGTTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCACGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGATGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGCCCGAACCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACACGCTGGAATCGCACTGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

3D structure

• AlphaFold DB: A0A193SJ85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.652	99.551	0.773
pilR	Acinetobacter baumannii strain A118	49.244	100	0.512
luxO	Vibrio cholerae strain A1552	37.838	99.775	0.378