Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C6H34_RS03305 Genome accession   NZ_LT963395
Coordinates   684230..685822 (+) Length   530 a.a.
NCBI ID   WP_065348989.1    Uniprot ID   A0A193SJ03
Organism   Pseudomonas cerasi isolate PL963     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 679230..690822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H34_RS03285 pgeF 681019..681749 (-) 731 Protein_633 peptidoglycan editing factor PgeF -
  C6H34_RS03290 (PL963_00637) rluD 681746..682708 (-) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6H34_RS03295 (PL963_00638) - 682858..683880 (+) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  C6H34_RS03300 (PL963_00639) - 684001..684240 (+) 240 WP_032609810.1 PP0621 family protein -
  C6H34_RS03305 (PL963_00640) pilS 684230..685822 (+) 1593 WP_065348989.1 sensor histidine kinase Regulator
  C6H34_RS03310 (PL963_00641) pilR 685825..687162 (+) 1338 WP_065348988.1 sigma-54-dependent transcriptional regulator Regulator
  C6H34_RS03315 (PL963_00642) thiO 687292..688395 (-) 1104 WP_065348987.1 glycine oxidase ThiO -
  C6H34_RS03320 (PL963_00643) - 688421..688822 (-) 402 WP_065348986.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57984.93 Da        Isoelectric Point: 7.0012

>NTDB_id=1148780 C6H34_RS03305 WP_065348989.1 684230..685822(+) (pilS) [Pseudomonas cerasi isolate PL963]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFKILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQGALHLLGQEQLVGQLID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVVEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGKNHPSAQVWLKLHNDSRSELPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1148780 C6H34_RS03305 WP_065348989.1 684230..685822(+) (pilS) [Pseudomonas cerasi isolate PL963]
GTGACCGCTGACTCACCGTCCCTTGTCAGCCCGCAGGCGCAGCGGATTCTGCGGCTGTACCACCTCTATCGACTGACCAT
CGGCGTCGTACTGGTCCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGTTGCTGGTTGTATCTGGTGTTCAAAATTCTGGTCGTCGTGCTACTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCGCTGTTCTACGCCGCGGGCGGGCCCTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTAGCGATCAGCAATGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAGCAGCG
CGCGGCGGATGTCGACAGCCTGGAGGCACTCAACGCACTCATTCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGGGGGCCTTGCACCTGCTGGGCCAGGAACAACTGGTCGGCCAGCTCATCGAC
ACCTGCTCGCCACAACTGGTCGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTGGGGCTGGTACTGCAACCGAGCTTCGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCACGAA
ATACGCAACCCGCTGGGTGCCGTCAGTCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGATCGGGTCATCGAAAATGTCCTGCAATTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTCGACCTGAAAACCTGGCTGGAACACTTTGTCGTTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGTCGATTCATGTCGACATAAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAACTGACGCAAATCATGACCAA
CCTGTTGCAGAACGGCCTGCGCTACAGCGGCAAAAATCATCCATCAGCACAGGTCTGGCTGAAACTGCACAATGACTCCA
GAAGCGAGCTGCCTACGCTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTTGAGCCG
TTTTTCACCACAGAGAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCACCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193SJ03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.452

100

0.606

Multiple sequence alignment