Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V529_RS19815 Genome accession   NZ_CP006890
Coordinates   4100425..4100943 (-) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4080216..4101270 4100425..4100943 within 0


Gene organization within MGE regions


Location: 4080216..4101270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS19710 (V529_40410) - 4080216..4081124 (-) 909 WP_038460581.1 LysR family transcriptional regulator -
  V529_RS19715 (V529_40420) - 4081243..4082028 (+) 786 WP_032875362.1 3-hydroxybutyrate dehydrogenase -
  V529_RS19720 (V529_40430) - 4082849..4083394 (+) 546 WP_007615038.1 hypothetical protein -
  V529_RS19725 (V529_40440) - 4083523..4083981 (-) 459 WP_038460583.1 hypothetical protein -
  V529_RS19730 (V529_40450) - 4084057..4084842 (-) 786 WP_038460585.1 SAR2788 family putative toxin -
  V529_RS19735 (V529_40460) - 4084857..4085846 (-) 990 WP_038460588.1 S8 family peptidase -
  V529_RS20610 - 4086289..4086507 (+) 219 WP_079978484.1 DUF255 domain-containing protein -
  V529_RS19740 (V529_40470) - 4086424..4087872 (-) 1449 WP_038460590.1 PLP-dependent aminotransferase family protein -
  V529_RS19745 (V529_40480) - 4088000..4088911 (+) 912 WP_038460593.1 EamA family transporter -
  V529_RS19940 - 4089081..4089479 (-) 399 WP_051590124.1 hypothetical protein -
  V529_RS19755 (V529_40500) - 4089796..4090437 (-) 642 WP_038460596.1 NAD(P)H-dependent oxidoreductase -
  V529_RS19760 - 4090633..4091133 (+) 501 WP_038460599.1 Rrf2 family transcriptional regulator -
  V529_RS19765 (V529_40520) - 4091391..4091708 (+) 318 WP_228842193.1 DoxX family membrane protein -
  V529_RS19770 (V529_40530) - 4092120..4094189 (+) 2070 WP_038460601.1 thioredoxin domain-containing protein -
  V529_RS19775 (V529_40540) - 4094186..4095082 (-) 897 WP_038460603.1 CPBP family intramembrane glutamic endopeptidase -
  V529_RS19780 (V529_40550) - 4095262..4096593 (+) 1332 WP_038460605.1 MFS transporter -
  V529_RS19785 (V529_40560) - 4096625..4097005 (-) 381 WP_032875338.1 VOC family protein -
  V529_RS19790 (V529_40570) - 4097062..4098000 (-) 939 WP_038460607.1 LacI family DNA-binding transcriptional regulator -
  V529_RS19795 (V529_40580) xth 4098063..4098821 (-) 759 WP_038460610.1 exodeoxyribonuclease III -
  V529_RS19800 (V529_40590) - 4098818..4099375 (-) 558 WP_038460612.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  V529_RS19805 (V529_40600) - 4099372..4099953 (-) 582 WP_038460614.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  V529_RS19810 (V529_40610) rpsR 4100142..4100381 (-) 240 WP_029325793.1 30S ribosomal protein S18 -
  V529_RS19815 (V529_40620) ssbA 4100425..4100943 (-) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  V529_RS19820 (V529_40630) rpsF 4100983..4101270 (-) 288 WP_004392977.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=114878 V529_RS19815 WP_007615071.1 4100425..4100943(-) (ssbA) [Bacillus velezensis SQR9]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=114878 V529_RS19815 WP_007615071.1 4100425..4100943(-) (ssbA) [Bacillus velezensis SQR9]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372

Multiple sequence alignment