Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C0M08_RS04655 Genome accession   NZ_LT962932
Coordinates   911952..912458 (+) Length   168 a.a.
NCBI ID   WP_002967690.1    Uniprot ID   A0A7L9MC56
Organism   Brucella melitensis isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 906952..917458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0M08_RS04640 - 907667..907942 (+) 276 WP_002964234.1 HU family DNA-binding protein -
  C0M08_RS04645 uvrA 908129..911053 (-) 2925 WP_004686427.1 excinuclease ABC subunit UvrA -
  C0M08_RS04650 - 911184..911384 (-) 201 WP_002964232.1 hypothetical protein -
  C0M08_RS04655 ssb 911952..912458 (+) 507 WP_002967690.1 single-stranded DNA-binding protein Machinery gene
  C0M08_RS04660 - 912362..912562 (-) 201 WP_002971429.1 hypothetical protein -
  C0M08_RS17185 - 912614..913001 (-) 388 Protein_881 hypothetical protein -
  C0M08_RS04675 phnF 913144..913905 (-) 762 WP_004683825.1 phosphonate metabolism transcriptional regulator PhnF -
  C0M08_RS04680 phnN 914092..914670 (+) 579 WP_004685664.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  C0M08_RS04685 - 914761..915390 (-) 630 WP_002967687.1 MarC family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18371.15 Da        Isoelectric Point: 5.3476

>NTDB_id=1148657 C0M08_RS04655 WP_002967690.1 911952..912458(+) (ssb) [Brucella melitensis isolate]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1148657 C0M08_RS04655 WP_002967690.1 911952..912458(+) (ssb) [Brucella melitensis isolate]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.512
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405

Multiple sequence alignment