Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C6H33_RS03425 Genome accession   NZ_LT962481
Coordinates   681397..681948 (+) Length   183 a.a.
NCBI ID   WP_024659933.1    Uniprot ID   A0AAJ4B3Z4
Organism   Pseudomonas syringae pv. syringae isolate CFBP2118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 676397..686948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H33_RS03410 (CFBP2118_00628) bfr 676470..676934 (+) 465 WP_003317095.1 bacterioferritin -
  C6H33_RS03415 (CFBP2118_00629) uvrA 677029..679863 (-) 2835 WP_162496635.1 excinuclease ABC subunit UvrA -
  C6H33_RS03420 (CFBP2118_00630) - 679993..681387 (+) 1395 WP_003400420.1 MFS transporter -
  C6H33_RS03425 (CFBP2118_00631) ssb 681397..681948 (+) 552 WP_024659933.1 single-stranded DNA-binding protein Machinery gene
  C6H33_RS03430 (CFBP2118_00632) - 682080..683192 (-) 1113 WP_104723076.1 endo-1,4-beta-xylanase -
  C6H33_RS03435 (CFBP2118_00633) - 683192..683935 (-) 744 WP_003400414.1 inositol monophosphatase family protein -
  C6H33_RS03440 (CFBP2118_00634) - 683932..684693 (-) 762 WP_024642449.1 glycerophosphoryl diester phosphodiesterase -
  C6H33_RS03445 (CFBP2118_00635) - 684700..685806 (-) 1107 WP_104723077.1 ABC transporter ATP-binding protein -
  C6H33_RS03450 (CFBP2118_00636) - 685803..686696 (-) 894 WP_024642447.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20364.47 Da        Isoelectric Point: 5.9539

>NTDB_id=1148559 C6H33_RS03425 WP_024659933.1 681397..681948(+) (ssb) [Pseudomonas syringae pv. syringae isolate CFBP2118]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQRDSR
PAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1148559 C6H33_RS03425 WP_024659933.1 681397..681948(+) (ssb) [Pseudomonas syringae pv. syringae isolate CFBP2118]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAACGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACGCTCAACAAGGTCAAGGCGGTGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAGAACTACAATCAGCAGCCGCCACAACGCGACTCGCGT
CCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.757

100

0.574
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.497
  ssb Neisseria gonorrhoeae MS11

44.865

100

0.454
  ssb Neisseria meningitidis MC58

43.956

99.454

0.437

Multiple sequence alignment