Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PL963_RS23890 Genome accession   NZ_LT962480
Coordinates   5330082..5330633 (-) Length   183 a.a.
NCBI ID   WP_024659933.1    Uniprot ID   A0AAJ4B3Z4
Organism   Pseudomonas syringae pv. syringae isolate CFBP4215     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5325082..5335633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL963_RS23865 (CFBP4215_04563) - 5325334..5326227 (+) 894 WP_032654178.1 ABC transporter permease subunit -
  PL963_RS23870 (CFBP4215_04564) - 5326224..5327330 (+) 1107 WP_003400409.1 ABC transporter ATP-binding protein -
  PL963_RS23875 (CFBP4215_04565) - 5327337..5328098 (+) 762 WP_003400412.1 glycerophosphoryl diester phosphodiesterase -
  PL963_RS23880 (CFBP4215_04566) - 5328095..5328838 (+) 744 WP_003400414.1 inositol monophosphatase family protein -
  PL963_RS23885 (CFBP4215_04567) - 5328838..5329950 (+) 1113 WP_032654181.1 endo-1,4-beta-xylanase -
  PL963_RS23890 (CFBP4215_04568) ssb 5330082..5330633 (-) 552 WP_024659933.1 single-stranded DNA-binding protein Machinery gene
  PL963_RS23895 (CFBP4215_04569) - 5330643..5332037 (-) 1395 WP_003400420.1 MFS transporter -
  PL963_RS23900 (CFBP4215_04570) uvrA 5332167..5335001 (+) 2835 WP_024638199.1 excinuclease ABC subunit UvrA -
  PL963_RS23905 (CFBP4215_04571) bfr 5335096..5335560 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20364.47 Da        Isoelectric Point: 5.9539

>NTDB_id=1148551 PL963_RS23890 WP_024659933.1 5330082..5330633(-) (ssb) [Pseudomonas syringae pv. syringae isolate CFBP4215]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQRDSR
PAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1148551 PL963_RS23890 WP_024659933.1 5330082..5330633(-) (ssb) [Pseudomonas syringae pv. syringae isolate CFBP4215]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACGCTCAACAAGGTCAAGGCGGTGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCACCGCAGCAGAACTACAACCAGCAGCCGCCACAACGCGACTCGCGT
CCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.757

100

0.574
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.497
  ssb Neisseria gonorrhoeae MS11

44.865

100

0.454
  ssb Neisseria meningitidis MC58

43.956

99.454

0.437

Multiple sequence alignment