Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   V529_RS12505 Genome accession   NZ_CP006890
Coordinates   2660074..2660382 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2655074..2665382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS12455 (V529_25680) sinR 2655237..2655572 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  V529_RS12460 (V529_25690) - 2655620..2656405 (-) 786 WP_003153102.1 TasA family protein -
  V529_RS12465 (V529_25700) - 2656470..2657054 (-) 585 WP_012117977.1 signal peptidase I -
  V529_RS12470 (V529_25710) tapA 2657026..2657697 (-) 672 WP_038459173.1 amyloid fiber anchoring/assembly protein TapA -
  V529_RS12475 (V529_25720) - 2657956..2658285 (+) 330 WP_038459175.1 DUF3889 domain-containing protein -
  V529_RS12480 (V529_25730) - 2658326..2658505 (-) 180 WP_022552966.1 YqzE family protein -
  V529_RS12485 (V529_25740) comGG 2658562..2658939 (-) 378 WP_038459177.1 competence type IV pilus minor pilin ComGG Machinery gene
  V529_RS12490 (V529_25750) comGF 2658940..2659440 (-) 501 WP_228842201.1 competence type IV pilus minor pilin ComGF -
  V529_RS12495 (V529_25760) comGE 2659349..2659663 (-) 315 WP_038459179.1 competence type IV pilus minor pilin ComGE Machinery gene
  V529_RS12500 (V529_25770) comGD 2659647..2660084 (-) 438 WP_038459181.1 competence type IV pilus minor pilin ComGD Machinery gene
  V529_RS12505 (V529_25780) comGC 2660074..2660382 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  V529_RS12510 (V529_25790) comGB 2660387..2661424 (-) 1038 WP_038459183.1 competence type IV pilus assembly protein ComGB Machinery gene
  V529_RS12515 (V529_25800) comGA 2661411..2662481 (-) 1071 WP_038459186.1 competence type IV pilus ATPase ComGA Machinery gene
  V529_RS12520 (V529_25810) - 2662678..2663628 (-) 951 WP_032874012.1 magnesium transporter CorA family protein -
  V529_RS12525 (V529_25820) - 2663774..2665075 (+) 1302 WP_038459188.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=114847 V529_RS12505 WP_003153087.1 2660074..2660382(-) (comGC) [Bacillus velezensis SQR9]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=114847 V529_RS12505 WP_003153087.1 2660074..2660382(-) (comGC) [Bacillus velezensis SQR9]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTT
AATTACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACTGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment