Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | V529_RS12455 | Genome accession | NZ_CP006890 |
| Coordinates | 2655237..2655572 (+) | Length | 111 a.a. |
| NCBI ID | WP_003153104.1 | Uniprot ID | - |
| Organism | Bacillus velezensis SQR9 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2650237..2660572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V529_RS12435 (V529_25640) | gcvT | 2650843..2651943 (-) | 1101 | WP_038459167.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| V529_RS12440 (V529_25650) | - | 2652367..2654037 (+) | 1671 | WP_038459170.1 | SNF2-related protein | - |
| V529_RS12445 (V529_25660) | - | 2654059..2654853 (+) | 795 | WP_007612541.1 | YqhG family protein | - |
| V529_RS12450 (V529_25670) | sinI | 2655030..2655203 (+) | 174 | WP_007612543.1 | anti-repressor SinI family protein | Regulator |
| V529_RS12455 (V529_25680) | sinR | 2655237..2655572 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| V529_RS12460 (V529_25690) | - | 2655620..2656405 (-) | 786 | WP_003153102.1 | TasA family protein | - |
| V529_RS12465 (V529_25700) | - | 2656470..2657054 (-) | 585 | WP_012117977.1 | signal peptidase I | - |
| V529_RS12470 (V529_25710) | tapA | 2657026..2657697 (-) | 672 | WP_038459173.1 | amyloid fiber anchoring/assembly protein TapA | - |
| V529_RS12475 (V529_25720) | - | 2657956..2658285 (+) | 330 | WP_038459175.1 | DUF3889 domain-containing protein | - |
| V529_RS12480 (V529_25730) | - | 2658326..2658505 (-) | 180 | WP_022552966.1 | YqzE family protein | - |
| V529_RS12485 (V529_25740) | comGG | 2658562..2658939 (-) | 378 | WP_038459177.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| V529_RS12490 (V529_25750) | comGF | 2658940..2659440 (-) | 501 | WP_228842201.1 | competence type IV pilus minor pilin ComGF | - |
| V529_RS12495 (V529_25760) | comGE | 2659349..2659663 (-) | 315 | WP_038459179.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| V529_RS12500 (V529_25770) | comGD | 2659647..2660084 (-) | 438 | WP_038459181.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| V529_RS12505 (V529_25780) | comGC | 2660074..2660382 (-) | 309 | WP_003153087.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12972.64 Da Isoelectric Point: 7.2023
>NTDB_id=114843 V529_RS12455 WP_003153104.1 2655237..2655572(+) (sinR) [Bacillus velezensis SQR9]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=114843 V529_RS12455 WP_003153104.1 2655237..2655572(+) (sinR) [Bacillus velezensis SQR9]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
99.099 |
100 |
0.991 |