Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | V529_RS12495 | Genome accession | NZ_CP006890 |
| Coordinates | 2659349..2659663 (-) | Length | 104 a.a. |
| NCBI ID | WP_038459179.1 | Uniprot ID | - |
| Organism | Bacillus velezensis SQR9 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2654349..2664663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V529_RS12450 (V529_25670) | sinI | 2655030..2655203 (+) | 174 | WP_007612543.1 | anti-repressor SinI family protein | Regulator |
| V529_RS12455 (V529_25680) | sinR | 2655237..2655572 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| V529_RS12460 (V529_25690) | - | 2655620..2656405 (-) | 786 | WP_003153102.1 | TasA family protein | - |
| V529_RS12465 (V529_25700) | - | 2656470..2657054 (-) | 585 | WP_012117977.1 | signal peptidase I | - |
| V529_RS12470 (V529_25710) | tapA | 2657026..2657697 (-) | 672 | WP_038459173.1 | amyloid fiber anchoring/assembly protein TapA | - |
| V529_RS12475 (V529_25720) | - | 2657956..2658285 (+) | 330 | WP_038459175.1 | DUF3889 domain-containing protein | - |
| V529_RS12480 (V529_25730) | - | 2658326..2658505 (-) | 180 | WP_022552966.1 | YqzE family protein | - |
| V529_RS12485 (V529_25740) | comGG | 2658562..2658939 (-) | 378 | WP_038459177.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| V529_RS12490 (V529_25750) | comGF | 2658940..2659440 (-) | 501 | WP_228842201.1 | competence type IV pilus minor pilin ComGF | - |
| V529_RS12495 (V529_25760) | comGE | 2659349..2659663 (-) | 315 | WP_038459179.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| V529_RS12500 (V529_25770) | comGD | 2659647..2660084 (-) | 438 | WP_038459181.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| V529_RS12505 (V529_25780) | comGC | 2660074..2660382 (-) | 309 | WP_003153087.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V529_RS12510 (V529_25790) | comGB | 2660387..2661424 (-) | 1038 | WP_038459183.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| V529_RS12515 (V529_25800) | comGA | 2661411..2662481 (-) | 1071 | WP_038459186.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V529_RS12520 (V529_25810) | - | 2662678..2663628 (-) | 951 | WP_032874012.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11932.91 Da Isoelectric Point: 5.8321
>NTDB_id=114845 V529_RS12495 WP_038459179.1 2659349..2659663(-) (comGE) [Bacillus velezensis SQR9]
MLNGNKGFSTIETLSAMAIWLFLMTSIIPVWTDMLTDGLKIEDRQEAYQLLQKHISTYMMTGKKPPSPGVKWKEDGEYYK
VCAADRSEKEMCLSILKTDWLYAS
MLNGNKGFSTIETLSAMAIWLFLMTSIIPVWTDMLTDGLKIEDRQEAYQLLQKHISTYMMTGKKPPSPGVKWKEDGEYYK
VCAADRSEKEMCLSILKTDWLYAS
Nucleotide
Download Length: 315 bp
>NTDB_id=114845 V529_RS12495 WP_038459179.1 2659349..2659663(-) (comGE) [Bacillus velezensis SQR9]
ATGCTAAACGGAAATAAGGGGTTCTCTACTATTGAAACACTATCAGCAATGGCCATTTGGCTGTTCCTTATGACGTCTAT
CATTCCGGTCTGGACGGACATGCTGACAGATGGTCTGAAAATAGAAGATCGCCAGGAAGCGTACCAGCTTCTTCAGAAAC
ATATCAGCACTTATATGATGACCGGAAAAAAGCCGCCGTCTCCCGGTGTGAAGTGGAAGGAGGATGGTGAGTATTACAAA
GTGTGTGCGGCTGACCGCAGCGAAAAAGAAATGTGCCTCAGTATTCTCAAAACAGACTGGCTTTACGCTTCTTAA
ATGCTAAACGGAAATAAGGGGTTCTCTACTATTGAAACACTATCAGCAATGGCCATTTGGCTGTTCCTTATGACGTCTAT
CATTCCGGTCTGGACGGACATGCTGACAGATGGTCTGAAAATAGAAGATCGCCAGGAAGCGTACCAGCTTCTTCAGAAAC
ATATCAGCACTTATATGATGACCGGAAAAAAGCCGCCGTCTCCCGGTGTGAAGTGGAAGGAGGATGGTGAGTATTACAAA
GTGTGTGCGGCTGACCGCAGCGAAAAAGAAATGTGCCTCAGTATTCTCAAAACAGACTGGCTTTACGCTTCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Bacillus subtilis subsp. subtilis str. 168 |
43.478 |
100 |
0.481 |