Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LSAF01_RS00040 | Genome accession | NZ_LT960777 |
| Coordinates | 9682..10194 (+) | Length | 170 a.a. |
| NCBI ID | WP_011373726.1 | Uniprot ID | A0A094Y4Q3 |
| Organism | Latilactobacillus sakei strain FLEC01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4682..15194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAF01_RS00030 (LSAF01_0006) | gyrA | 6538..9111 (+) | 2574 | WP_076645812.1 | DNA gyrase subunit A | - |
| LSAF01_RS00035 (LSAF01_0007) | rpsF | 9347..9643 (+) | 297 | WP_011373725.1 | 30S ribosomal protein S6 | - |
| LSAF01_RS00040 (LSAF01_0008) | ssb | 9682..10194 (+) | 513 | WP_011373726.1 | single-stranded DNA-binding protein | Machinery gene |
| LSAF01_RS00045 (LSAF01_0009) | rpsR | 10225..10464 (+) | 240 | WP_004265822.1 | 30S ribosomal protein S18 | - |
| LSAF01_RS00050 (LSAF01_0010) | - | 10682..12715 (+) | 2034 | WP_016264315.1 | DHH family phosphoesterase | - |
| LSAF01_RS00055 (LSAF01_0011) | rplI | 12736..13188 (+) | 453 | WP_011373728.1 | 50S ribosomal protein L9 | - |
| LSAF01_RS00060 (LSAF01_0012) | dnaB | 13319..14716 (+) | 1398 | WP_016264316.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18610.19 Da Isoelectric Point: 4.6856
>NTDB_id=1148340 LSAF01_RS00040 WP_011373726.1 9682..10194(+) (ssb) [Latilactobacillus sakei strain FLEC01]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=1148340 LSAF01_RS00040 WP_011373726.1 9682..10194(+) (ssb) [Latilactobacillus sakei strain FLEC01]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
100 |
100 |
1 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.576 |
| ssb | Glaesserella parasuis strain SC1401 |
33.69 |
100 |
0.371 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.353 |
0.371 |