Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HDIA_RS08120 Genome accession   NZ_LT960614
Coordinates   1753112..1753636 (+) Length   174 a.a.
NCBI ID   WP_099555712.1    Uniprot ID   A0A2C9D4Q8
Organism   Hartmannibacter diazotrophicus strain E19T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1748112..1758636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HDIA_RS08105 (HDIA_1615) - 1748410..1748850 (+) 441 WP_245884202.1 pyridoxamine 5'-phosphate oxidase family protein -
  HDIA_RS08110 (HDIA_1616) - 1749109..1749258 (-) 150 WP_099555710.1 DUF1127 domain-containing protein -
  HDIA_RS08115 (HDIA_1617) uvrA 1749833..1752706 (-) 2874 WP_197708113.1 excinuclease ABC subunit UvrA -
  HDIA_RS08120 (HDIA_1618) ssb 1753112..1753636 (+) 525 WP_099555712.1 single-stranded DNA-binding protein Machinery gene
  HDIA_RS08125 (HDIA_1619) - 1753680..1754327 (+) 648 WP_099555713.1 glutathione S-transferase family protein -
  HDIA_RS08130 (HDIA_1620) - 1754572..1756050 (+) 1479 WP_099555714.1 Ppx/GppA phosphatase family protein -
  HDIA_RS08135 (HDIA_1621) - 1756043..1756771 (+) 729 WP_245884203.1 RlmE family RNA methyltransferase -
  HDIA_RS08140 (HDIA_1622) - 1756970..1757425 (+) 456 WP_099555715.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18800.57 Da        Isoelectric Point: 5.9911

>NTDB_id=1148333 HDIA_RS08120 WP_099555712.1 1753112..1753636(+) (ssb) [Hartmannibacter diazotrophicus strain E19T]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRVATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAEQYLRKGAKVYI
EGQLQTREWDDQSGQKRYSTEIVLQGFNSTLTMLDGRGERGEGDFGGGSGGGSDFGRSSPMERSGGSSGRAASSTGGGGS
RGGYSSDMDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1148333 HDIA_RS08120 WP_099555712.1 1753112..1753636(+) (ssb) [Hartmannibacter diazotrophicus strain E19T]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAACCTTGGGGCGGATCCGGAAATCCGCCGAACGCAGGACGGCCG
CCCGATCGCCAATCTTCGTGTCGCGACATCCGAAAGCTGGCGCGACCGCAACAGCGGCGAGCGCCGCGAGAAGACGGAAT
GGCATCGCGTCGTCATCTTCAACGAGGGGCTTTGCAAGGTCGCCGAGCAGTATCTTCGCAAGGGCGCCAAGGTCTATATC
GAGGGTCAGTTGCAGACCCGCGAATGGGACGACCAGAGTGGCCAGAAGCGCTATTCGACCGAGATCGTGCTGCAGGGCTT
CAACTCGACGCTCACGATGCTCGACGGCCGGGGTGAGCGCGGCGAGGGTGACTTCGGTGGCGGCAGCGGCGGCGGATCGG
ACTTTGGCCGTTCCAGCCCGATGGAGCGCAGCGGTGGCTCCAGCGGTCGTGCGGCGTCCTCGACCGGCGGCGGCGGATCG
CGCGGCGGCTATTCCTCCGACATGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9D4Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.523
  ssb Vibrio cholerae strain A1552

48.555

99.425

0.483
  ssb Neisseria meningitidis MC58

36.872

100

0.379
  ssb Neisseria gonorrhoeae MS11

36.313

100

0.374

Multiple sequence alignment