Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ODI_RS21995 Genome accession   NZ_LT907988
Coordinates   4805495..4805989 (-) Length   164 a.a.
NCBI ID   WP_067757931.1    Uniprot ID   -
Organism   Orrella dioscoreae isolate Orrdi1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4800495..4810989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODI_RS21975 (ODI_03144) - 4800960..4801949 (+) 990 WP_197707127.1 tripartite tricarboxylate transporter substrate binding protein -
  ODI_RS21980 (ODI_03145) - 4802051..4803652 (-) 1602 WP_067757925.1 rhodanese-related sulfurtransferase -
  ODI_RS21985 (ODI_03146) - 4803660..4804262 (-) 603 WP_067758389.1 cysteine dioxygenase -
  ODI_RS21990 (ODI_03147) - 4804500..4805411 (+) 912 WP_067757928.1 DUF808 domain-containing protein -
  ODI_RS21995 (ODI_03148) ssb 4805495..4805989 (-) 495 WP_067757931.1 single-stranded DNA-binding protein Machinery gene
  ODI_RS22000 (ODI_03149) - 4806263..4807150 (+) 888 WP_408635870.1 alpha/beta hydrolase -
  ODI_RS22005 (ODI_03150) - 4807203..4808021 (-) 819 WP_067757937.1 phosphodiesterase -
  ODI_RS22010 (ODI_03151) - 4808032..4809294 (-) 1263 WP_067757940.1 ABC transporter substrate-binding protein -
  ODI_RS22015 (ODI_03152) - 4809306..4810148 (-) 843 WP_067757943.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17858.82 Da        Isoelectric Point: 5.9760

>NTDB_id=1148233 ODI_RS21995 WP_067757931.1 4805495..4805989(-) (ssb) [Orrella dioscoreae isolate Orrdi1]
MASVNKVIIVGNLGRDPEVRYSPDGAAICNVSLATTSQWKDKNSGEKREETEWHRVVFYNRLAEIAGEYLKKGRSVYVEG
RLKTRKWTDKENIERYTTEIVADQMQMLGGREGGGGGEGGGYGGGESSAPRQRPQQSAPAPRPAAQPSSPAATNLADMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1148233 ODI_RS21995 WP_067757931.1 4805495..4805989(-) (ssb) [Orrella dioscoreae isolate Orrdi1]
ATGGCATCGGTCAACAAGGTCATCATCGTGGGCAACCTGGGGCGCGACCCCGAAGTGCGCTACAGCCCCGACGGCGCAGC
GATCTGCAACGTGTCGCTGGCCACCACCAGCCAGTGGAAGGACAAGAACAGCGGCGAAAAGCGCGAAGAGACGGAATGGC
ACCGTGTCGTCTTCTATAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACGTCGAAGGC
CGCCTGAAGACGCGCAAGTGGACCGACAAGGAAAACATCGAGCGCTACACCACCGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGCGAAGGCGGCGGCGGCGGTGAGGGCGGTGGTTACGGCGGTGGCGAATCGTCGGCGCCGCGCCAGCGTC
CGCAGCAGTCGGCACCGGCGCCCCGCCCGGCGGCGCAGCCCAGCTCGCCCGCGGCGACGAATCTGGCCGATATGGACGAC
GATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

51.429

100

0.549
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.543
  ssb Vibrio cholerae strain A1552

49.171

100

0.543
  ssb Neisseria gonorrhoeae MS11

50

100

0.53

Multiple sequence alignment