Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CKV94_RS04090 Genome accession   NZ_LT906482
Coordinates   815738..817030 (-) Length   430 a.a.
NCBI ID   WP_003824721.1    Uniprot ID   C0DYI6
Organism   Eikenella corrodens strain NCTC10596     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 810738..822030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS04075 (SAMEA4412678_00813) - 812308..812544 (+) 237 WP_003824718.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  CKV94_RS04080 (SAMEA4412678_00814) topA 812782..815082 (-) 2301 WP_003824719.1 type I DNA topoisomerase -
  CKV94_RS04085 (SAMEA4412678_00815) - 815271..815741 (-) 471 WP_003824720.1 DUF494 family protein -
  CKV94_RS04090 (SAMEA4412678_00816) dprA 815738..817030 (-) 1293 WP_003824721.1 DNA-processing protein DprA Machinery gene
  CKV94_RS04095 (SAMEA4412678_00817) - 817256..817693 (+) 438 WP_003824723.1 type II toxin-antitoxin system RatA family toxin -
  CKV94_RS04100 (SAMEA4412678_00818) - 817686..817991 (+) 306 WP_003824724.1 RnfH family protein -
  CKV94_RS11580 - 818083..818825 (+) 743 Protein_796 UvrD-helicase domain-containing protein -
  CKV94_RS11585 (SAMEA4412678_00820) - 818850..820103 (+) 1254 WP_408607581.1 3'-5' exonuclease -
  CKV94_RS04110 (SAMEA4412678_00821) - 820612..820962 (+) 351 WP_095114595.1 hypothetical protein -
  CKV94_RS04115 - 820971..821210 (+) 240 WP_155733664.1 hypothetical protein -
  CKV94_RS04120 (SAMEA4412678_00822) - 821218..821871 (-) 654 WP_157727247.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 46357.18 Da        Isoelectric Point: 5.2119

>NTDB_id=1148102 CKV94_RS04090 WP_003824721.1 815738..817030(-) (dprA) [Eikenella corrodens strain NCTC10596]
MENSAERLAWIQLALMPYIGAETFYELCRHYGSAAAVWAAEQEVGDILPSRPAQEAWRSRRHEAEAAAEAALAWEQQENC
RLLLACDADFPPQLGEGITAPPLLFARGNTEWLHRPSVAIVGSRHATPQAMRIAGEFGEALAAAGIVTVSGMAAGIDSAA
HEGALRKQGGTVAVWGTGIDRVYPVANKALAHRIAEQGCVLSEFPLGTSPLAGNFPRRNRLIAALSSAVLVVEAALESGS
LITARLAADMGREVFAVPGSIDNPHSKGCHALIKQGAKLTETLADILEECPQLPQTASTSRQTAAQTKRLPENERSEFLR
SKNERSEFRQNERSEFLQNQNADVEHRQAESLPSEQPALVDATPASTETETSPLLQAMGYDAVHPDSLAERLKLPAADVY
AELTLLEINGQIAPLSGGRYQRIAPNRNTK

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=1148102 CKV94_RS04090 WP_003824721.1 815738..817030(-) (dprA) [Eikenella corrodens strain NCTC10596]
ATGGAAAACTCCGCAGAACGTTTGGCTTGGATACAGCTTGCGCTGATGCCGTATATCGGCGCGGAAACGTTTTACGAACT
CTGCCGCCACTACGGTTCTGCAGCTGCCGTGTGGGCTGCCGAGCAGGAAGTGGGCGACATCCTGCCCAGCCGCCCGGCGC
AGGAAGCCTGGCGCAGCCGCCGCCACGAGGCCGAGGCTGCCGCCGAAGCCGCGCTGGCATGGGAGCAGCAGGAAAACTGC
CGTTTATTGTTGGCTTGCGACGCAGATTTTCCGCCGCAATTGGGCGAAGGCATCACCGCACCGCCCTTATTGTTTGCCCG
CGGCAACACCGAATGGCTGCATCGGCCTTCAGTGGCCATCGTGGGCAGCCGGCACGCCACGCCGCAAGCGATGCGGATTG
CCGGTGAATTTGGCGAAGCCTTGGCCGCTGCCGGCATCGTAACCGTATCCGGCATGGCCGCCGGTATCGACAGCGCCGCC
CACGAAGGCGCGTTGCGCAAGCAGGGTGGCACGGTGGCGGTGTGGGGCACGGGCATCGACCGCGTATATCCCGTGGCCAA
CAAAGCACTGGCGCACCGCATTGCCGAACAAGGCTGCGTGCTCTCCGAATTCCCCTTGGGCACGAGTCCGTTGGCCGGCA
ACTTTCCGCGCCGCAACCGCCTGATTGCCGCCCTCTCCTCTGCCGTGCTGGTGGTGGAAGCTGCGTTGGAATCCGGTTCG
CTGATTACCGCGCGGCTGGCGGCAGACATGGGGCGCGAAGTGTTCGCCGTGCCCGGCTCCATCGACAACCCGCACAGCAA
AGGCTGCCACGCGCTGATTAAGCAAGGTGCGAAGCTTACCGAAACACTGGCCGATATTCTGGAAGAATGCCCGCAGCTGC
CGCAAACCGCATCGACTAGCCGCCAAACGGCAGCCCAAACCAAAAGGCTACCTGAAAACGAGCGCAGCGAGTTTCTACGT
AGTAAAAACGAGCGTAGCGAGTTTCGCCAAAACGAACGTAGTGAGTTTCTACAAAACCAAAACGCAGATGTCGAACATCG
CCAAGCCGAATCGCTCCCAAGCGAACAGCCAGCCTTGGTCGATGCCACACCGGCATCAACTGAAACCGAAACCTCACCGC
TGCTGCAAGCCATGGGCTACGACGCGGTACACCCCGACAGCTTGGCCGAGCGGCTCAAACTGCCCGCGGCCGATGTGTAT
GCCGAACTGACTTTATTAGAAATCAACGGCCAAATTGCCCCGCTCTCCGGCGGCCGTTACCAACGGATTGCTCCAAACAG
GAATACCAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)

DprA winged helix domain (DprA_WH)

(362-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0DYI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

57.007

97.907

0.558
  dprA Neisseria gonorrhoeae MS11

56.532

97.907

0.553
  dprA Neisseria meningitidis strain C311

55.529

98.837

0.549
  dprA Neisseria meningitidis MC58

55.529

98.837

0.549

Multiple sequence alignment