Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CKV94_RS01245 Genome accession   NZ_LT906482
Coordinates   237115..239238 (-) Length   707 a.a.
NCBI ID   WP_003823230.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 232115..244238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS11565 - 232673..233089 (+) 417 WP_408607584.1 uracil-DNA glycosylase family protein -
  CKV94_RS01220 (SAMEA4412678_00243) - 233316..233654 (+) 339 WP_023886832.1 hypothetical protein -
  CKV94_RS01225 (SAMEA4412678_00244) - 233686..234336 (-) 651 WP_064103257.1 IS1595-like element ISEco1 family transposase -
  CKV94_RS11415 - 234387..234554 (-) 168 WP_003823221.1 hypothetical protein -
  CKV94_RS11420 (SAMEA4412678_00245) - 234929..235270 (+) 342 WP_003823223.1 hypothetical protein -
  CKV94_RS01235 (SAMEA4412678_00246) aroB 235455..236531 (-) 1077 WP_035580151.1 3-dehydroquinate synthase -
  CKV94_RS01240 (SAMEA4412678_00247) - 236531..237085 (-) 555 WP_003823228.1 shikimate kinase -
  CKV94_RS01245 (SAMEA4412678_00248) pilQ 237115..239238 (-) 2124 WP_003823230.1 type IV pilus secretin family protein Machinery gene
  CKV94_RS01250 (SAMEA4412678_00249) - 239260..239793 (-) 534 WP_049257862.1 pilus assembly protein PilP -
  CKV94_RS01255 (SAMEA4412678_00250) - 239824..240438 (-) 615 WP_003823233.1 type 4a pilus biogenesis protein PilO -
  CKV94_RS01260 (SAMEA4412678_00251) - 240454..241143 (-) 690 WP_003823234.1 PilN domain-containing protein -
  CKV94_RS01265 (SAMEA4412678_00252) pilM 241145..242245 (-) 1101 WP_064086496.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76706.81 Da        Isoelectric Point: 9.7865

>NTDB_id=1148094 CKV94_RS01245 WP_003823230.1 237115..239238(-) (pilQ) [Eikenella corrodens strain NCTC10596]
MKIKKLQYLTALGMSLAMQGVLAGNITDINVSALPNNQKVIKIRFDRDMLKPSGFITTTPARIALDFPNTGVSLSQPVLQ
YNDSLLSQIAVAQDSSKTRVLLNLNRPGQYNAEIRGNEVWIYLNETGQASSSAVRATAPSNQIQQESLGVTESRATAGQN
ALGSNTANVAVDFHKSANNSGVIEINTAGYRGTPEVKQRANNLVILLKNNQLPIAAQRNLDVTDFSTPVRTISLRRLGND
TEITIKNQGGWEHKVNQSAGRYTITVSPKSTVAEDGINRNRNRNFTGKRVSLDFQDVDVRTILQILAKESNMNIVASDSV
SGKMTLSLKDVPWDQALDLVMQSRGLESRRNGNIIRVAPAEEFRKIDVETLENAKRIEELGPLVSRTFQLKYKDVNEFRK
ILNISDTGSSGGSGNNNNTLLSSRGSAVIDPATNTLIIKDNQNVIKEFERLIEQLDVPARQVMIEARIVEANDGFSRALG
VKFGYNKTSGSTRIGSGLGSGGANGNTFSIAPNVNLPAISATSSITIVRALSSGALGLELTAMQEQNRGKIISSPRVLTQ
DRKEATIKAGREIPYQEASSSGATSTSFKEAVLGLTVTPQITPDGNVIMDIKLNKDSVDENCSVLGTPCINTKELVTRAM
VEDGGTIILGGIYEEENSNSQYKVPLLGDIPVVGNLFRGTRRNNSKNELLIFITPRIMGSEGNVLRY

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=1148094 CKV94_RS01245 WP_003823230.1 237115..239238(-) (pilQ) [Eikenella corrodens strain NCTC10596]
ATGAAAATCAAAAAACTGCAATATCTAACCGCTTTAGGTATGAGCTTAGCCATGCAAGGCGTACTGGCTGGTAATATTAC
AGATATTAATGTTTCTGCTTTGCCGAATAATCAAAAAGTGATCAAAATTCGTTTTGATCGCGATATGCTGAAACCTAGCG
GTTTTATTACTACTACACCTGCTCGTATTGCTTTGGATTTCCCGAATACTGGTGTCAGCCTTAGTCAGCCAGTACTTCAA
TATAACGACTCATTGCTTAGCCAAATCGCGGTTGCTCAGGATAGTAGTAAGACTCGTGTTTTGCTCAATTTGAATAGACC
TGGGCAATATAATGCTGAAATCAGAGGTAATGAAGTTTGGATTTATTTGAACGAGACAGGTCAGGCATCCTCTTCGGCTG
TAAGAGCCACAGCTCCTAGCAACCAAATCCAACAAGAGTCTCTTGGCGTAACTGAGAGCAGGGCTACTGCAGGTCAAAAT
GCTCTTGGTAGTAATACTGCAAATGTAGCTGTTGATTTCCACAAAAGTGCAAATAATTCCGGTGTGATTGAAATTAATAC
TGCTGGCTATCGCGGTACTCCTGAAGTTAAACAGCGTGCTAATAACTTGGTTATTTTACTGAAAAATAACCAACTGCCGA
TTGCTGCGCAGCGCAATTTGGATGTAACTGATTTCAGTACCCCAGTTCGCACCATCAGCTTGCGCCGCTTGGGTAACGAT
ACAGAGATTACTATCAAAAATCAGGGTGGCTGGGAGCACAAAGTTAACCAATCTGCTGGTAGGTATACTATTACAGTTTC
TCCTAAATCTACAGTAGCTGAAGATGGTATTAACCGTAATCGCAACCGTAATTTTACCGGTAAACGTGTTTCTTTAGACT
TCCAAGACGTAGATGTGCGTACTATTCTGCAGATCTTAGCTAAAGAATCTAATATGAATATTGTGGCCAGTGACAGTGTT
TCTGGCAAAATGACCTTATCATTAAAAGATGTGCCTTGGGATCAGGCCCTAGATCTGGTAATGCAGTCACGAGGGTTAGA
ATCGCGTCGTAACGGTAATATTATCCGTGTTGCTCCGGCGGAAGAGTTCCGTAAAATTGATGTTGAGACTCTGGAAAATG
CTAAGCGTATTGAAGAACTCGGTCCTTTAGTATCTCGTACGTTCCAGTTGAAATACAAAGATGTCAATGAATTCCGTAAA
ATTTTGAATATTAGTGATACGGGTAGTTCAGGTGGTAGTGGCAACAATAATAATACTTTGTTGAGTAGTCGGGGGTCAGC
TGTAATTGATCCAGCTACAAACACATTGATTATTAAGGATAATCAGAATGTTATTAAAGAGTTTGAACGATTAATTGAAC
AATTGGACGTTCCTGCTCGCCAAGTGATGATTGAGGCTCGAATTGTTGAAGCTAATGATGGTTTCTCCCGTGCCTTGGGG
GTGAAGTTTGGTTACAACAAAACTTCTGGCTCAACTAGAATTGGTAGTGGCTTAGGTAGCGGTGGCGCTAACGGGAATAC
GTTCTCTATTGCACCGAACGTGAACTTACCGGCTATATCAGCAACCTCTTCTATCACTATAGTTCGGGCATTATCTTCTG
GTGCTTTGGGATTAGAGTTAACCGCTATGCAGGAACAAAACCGCGGTAAGATTATTTCTAGCCCGCGCGTGCTGACTCAA
GACCGCAAAGAAGCCACCATCAAGGCTGGTCGCGAGATTCCTTACCAAGAAGCTTCTTCCAGTGGTGCTACTAGTACCAG
CTTCAAAGAAGCGGTGTTAGGGTTGACTGTTACCCCGCAAATCACGCCTGATGGTAACGTGATTATGGATATCAAGCTGA
ATAAAGACTCAGTGGATGAAAACTGTAGCGTACTGGGTACTCCGTGTATTAACACTAAAGAGCTGGTTACCCGTGCGATG
GTGGAGGATGGTGGTACCATCATCTTGGGTGGTATCTATGAGGAAGAGAACTCTAATTCCCAATATAAGGTACCGCTGCT
GGGTGATATTCCGGTTGTTGGCAACTTGTTCCGTGGCACTAGACGTAATAACAGCAAAAACGAATTGCTGATCTTCATCA
CCCCGCGTATCATGGGCAGTGAAGGTAACGTTCTGCGCTACTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(386-461)

Secretin and TonB N terminus short domain (STN)

(313-359)

AMIN domain (AMIN)

(37-114)

Bacterial type II and III secretion system protein (Secretin)

(542-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

49.669

100

0.53
  pilQ Neisseria gonorrhoeae strain FA1090

52.101

100

0.526
  pilQ Neisseria meningitidis MC58

54.25

78.218

0.424
  pilQ Pseudomonas aeruginosa PAK

37.083

100

0.378

Multiple sequence alignment