Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V469_RS01630 Genome accession   NZ_CP006883
Coordinates   362649..363227 (-) Length   192 a.a.
NCBI ID   WP_011707639.1    Uniprot ID   A0AAX0XSG5
Organism   Aeromonas hydrophila J-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 357649..368227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V469_RS01610 (V469_01640) cspA 359142..359354 (-) 213 WP_011707644.1 RNA chaperone/antiterminator CspA -
  V469_RS01615 (V469_01645) - 359754..360038 (-) 285 WP_043119489.1 DUF3811 domain-containing protein -
  V469_RS01620 (V469_01650) - 360188..361066 (-) 879 WP_016352217.1 cation diffusion facilitator family transporter -
  V469_RS24320 - 361520..361642 (+) 123 WP_011707641.1 hypothetical protein -
  V469_RS01625 (V469_01660) - 361723..362481 (-) 759 WP_043119487.1 substrate-binding periplasmic protein -
  V469_RS01630 (V469_01665) ssb 362649..363227 (-) 579 WP_011707639.1 single-stranded DNA-binding protein Machinery gene
  V469_RS01635 (V469_01670) - 363755..364414 (+) 660 WP_011707638.1 LuxR C-terminal-related transcriptional regulator -
  V469_RS01640 (V469_01675) uvrA 364510..367338 (+) 2829 WP_016352215.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21161.56 Da        Isoelectric Point: 5.9247

>NTDB_id=114777 V469_RS01630 WP_011707639.1 362649..363227(-) (ssb) [Aeromonas hydrophila J-1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGGAGQGMGGQSQGNWGQQQGMQSQQPMNQARPAQAPQQNMQ
QQGGYARPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=114777 V469_RS01630 WP_011707639.1 362649..363227(-) (ssb) [Aeromonas hydrophila J-1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGACAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTTGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGTTCCCAAGTCTATGTT
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAAAGCGGCCAGGAGCGTTACACCACCGAAGTGCTGGTCGATGGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCGCCGGCCAGGGCATGGGTGGCCAGTCTCAGGGCAACT
GGGGTCAGCAGCAGGGCATGCAGTCCCAGCAGCCGATGAACCAGGCGCGTCCTGCCCAGGCTCCGCAGCAGAACATGCAG
CAGCAGGGCGGCTACGCTCGTCCGGCCCAGCAGCCACAGTCTGCACCGCCGGTGTACAATGAGCCGCCGATGGACTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.497

100

0.682
  ssb Glaesserella parasuis strain SC1401

53.684

98.958

0.531
  ssb Neisseria meningitidis MC58

47.917

100

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474

Multiple sequence alignment