Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CKV93_RS10285 Genome accession   NZ_LT906464
Coordinates   2075906..2076415 (-) Length   169 a.a.
NCBI ID   WP_095118073.1    Uniprot ID   A0A240C9Y3
Organism   Staphylococcus muscae strain NCTC13833     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2070906..2081415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV93_RS10260 (SAMEA4412661_02095) - 2071964..2073355 (-) 1392 WP_095118069.1 MFS transporter -
  CKV93_RS10270 (SAMEA4412661_02097) - 2074517..2075047 (-) 531 WP_095118071.1 Abi family protein -
  CKV93_RS10695 (SAMEA4412661_02098) - 2075065..2075454 (-) 390 WP_095118072.1 Abi family protein -
  CKV93_RS10280 (SAMEA4412661_02099) rpsR 2075612..2075854 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  CKV93_RS10285 (SAMEA4412661_02100) ssbA 2075906..2076415 (-) 510 WP_095118073.1 single-stranded DNA-binding protein Machinery gene
  CKV93_RS10290 (SAMEA4412661_02101) rpsF 2076441..2076737 (-) 297 WP_044360075.1 30S ribosomal protein S6 -
  CKV93_RS10295 (SAMEA4412661_02102) ychF 2077019..2078116 (-) 1098 WP_095118074.1 redox-regulated ATPase YchF -
  CKV93_RS10300 (SAMEA4412661_02103) - 2078116..2078328 (-) 213 WP_095118075.1 DUF951 domain-containing protein -
  CKV93_RS10305 (SAMEA4412661_02104) - 2078353..2079237 (-) 885 WP_095118076.1 mechanosensitive ion channel family protein -
  CKV93_RS10310 (SAMEA4412661_02105) - 2079267..2080079 (-) 813 WP_095118077.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18811.51 Da        Isoelectric Point: 5.7486

>NTDB_id=1147756 CKV93_RS10285 WP_095118073.1 2075906..2076415(-) (ssbA) [Staphylococcus muscae strain NCTC13833]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSANQRHAQNSPNHGNDFQSYGQSFGGQQQGQNSSYQNNQPARNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1147756 CKV93_RS10285 WP_095118073.1 2075906..2076415(-) (ssbA) [Staphylococcus muscae strain NCTC13833]
ATGATTAACAGAGTTGTATTAGTAGGTCGATTAACAAAAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTCGCAGTGAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGATTTTATTAACTGCGTTGTTT
TCCGTAAACAAGCTGAGAATGTTAATAATTTCTTATTCAAAGGTAGCCTTGCAGGTGTTGATGGTCGCTTACAGTCACGC
AGTTATGAAAACCAAGAAGGCCGACGCGTCTATGTTACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAGCCAAAATC
AGCGAATCAACGACACGCACAAAATAGTCCAAACCATGGAAATGACTTCCAAAGTTATGGACAAAGTTTCGGTGGACAAC
AGCAAGGCCAAAATTCGTCATATCAAAACAATCAGCCAGCACGCAATGATAACCCATTTGCGAATGCGAACGGGCCAATA
GACATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240C9Y3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.068

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

58.382

100

0.598
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

34.595

100

0.379

Multiple sequence alignment