Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RGR602_RS09370 | Genome accession | NZ_CP006877 |
| Coordinates | 1884031..1884549 (+) | Length | 172 a.a. |
| NCBI ID | WP_039844870.1 | Uniprot ID | A0A0B4X3B3 |
| Organism | Rhizobium gallicum bv. gallicum R602sp strain R602 voucher MSDJ1109 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1879031..1889549
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RGR602_RS09360 (RGR602_CH01897) | - | 1880002..1880808 (-) | 807 | WP_039844868.1 | DUF72 domain-containing protein | - |
| RGR602_RS09365 (RGR602_CH01898) | uvrA | 1880856..1883780 (-) | 2925 | WP_039844869.1 | excinuclease ABC subunit UvrA | - |
| RGR602_RS09370 (RGR602_CH01899) | ssb | 1884031..1884549 (+) | 519 | WP_039844870.1 | single-stranded DNA-binding protein | Machinery gene |
| RGR602_RS09375 (RGR602_CH01900) | - | 1885029..1885406 (+) | 378 | WP_039844871.1 | helix-turn-helix transcriptional regulator | - |
| RGR602_RS09380 (RGR602_CH01901) | - | 1885403..1885882 (+) | 480 | WP_039844872.1 | SRPBCC family protein | - |
| RGR602_RS09385 (RGR602_CH01902) | - | 1885879..1886538 (+) | 660 | WP_039844873.1 | glutathione S-transferase family protein | - |
| RGR602_RS09390 (RGR602_CH01903) | - | 1886980..1887612 (-) | 633 | WP_039844874.1 | MarC family protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18448.14 Da Isoelectric Point: 5.3175
>NTDB_id=114763 RGR602_RS09370 WP_039844870.1 1884031..1884549(+) (ssb) [Rhizobium gallicum bv. gallicum R602sp strain R602 voucher MSDJ1109]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRSSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQNGNDRYSTEVVLQGFNSTLTMLDGRGEGGGASAGGGRGSSNDFGGGGNYGDDYGAPAQPSGRSSGGGG
NFSRDLDDDIPF
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRSSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQNGNDRYSTEVVLQGFNSTLTMLDGRGEGGGASAGGGRGSSNDFGGGGNYGDDYGAPAQPSGRSSGGGG
NFSRDLDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=114763 RGR602_RS09370 WP_039844870.1 1884031..1884549(+) (ssb) [Rhizobium gallicum bv. gallicum R602sp strain R602 voucher MSDJ1109]
ATGGCTGGCAGCGTGAACAAGGTAATTCTGATCGGAAACGTGGGCGCAGACCCCGAAATCCGCAGGACGCAGGATGGCCG
CCCGATTGCCAATCTTCGCATCGCGACGTCCGAGACGTGGCGTGACCGCAGTTCCGGCGAGCGCCGCGAAAAAACCGAGT
GGCACACCGTCGTCGTTTTCAACGAAGGTCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAACGACCGCTATTCGACGGAAGTCGTGCTACAGGGGTT
CAATTCGACGTTGACGATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCGAGCGCCGGTGGCGGACGCGGCAGCAGCAACG
ATTTCGGTGGCGGCGGCAATTACGGAGACGATTACGGCGCCCCGGCGCAGCCGTCCGGTCGCAGCAGCGGTGGCGGCGGG
AATTTCTCGCGCGATCTCGATGACGATATCCCGTTCTAG
ATGGCTGGCAGCGTGAACAAGGTAATTCTGATCGGAAACGTGGGCGCAGACCCCGAAATCCGCAGGACGCAGGATGGCCG
CCCGATTGCCAATCTTCGCATCGCGACGTCCGAGACGTGGCGTGACCGCAGTTCCGGCGAGCGCCGCGAAAAAACCGAGT
GGCACACCGTCGTCGTTTTCAACGAAGGTCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAACGACCGCTATTCGACGGAAGTCGTGCTACAGGGGTT
CAATTCGACGTTGACGATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCGAGCGCCGGTGGCGGACGCGGCAGCAGCAACG
ATTTCGGTGGCGGCGGCAATTACGGAGACGATTACGGCGCCCCGGCGCAGCCGTCCGGTCGCAGCAGCGGTGGCGGCGGG
AATTTCTCGCGCGATCTCGATGACGATATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
45.596 |
100 |
0.512 |
| ssb | Vibrio cholerae strain A1552 |
48.889 |
100 |
0.512 |
| ssb | Neisseria meningitidis MC58 |
38.333 |
100 |
0.401 |
| ssb | Neisseria gonorrhoeae MS11 |
38.547 |
100 |
0.401 |