Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CKV88_RS01610 Genome accession   NZ_LT906460
Coordinates   387695..388198 (+) Length   167 a.a.
NCBI ID   WP_002464876.1    Uniprot ID   G5JL26
Organism   Staphylococcus simiae strain NCTC13838     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 382695..393198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV88_RS01580 (SAMEA4384339_00318) - 383621..384469 (+) 849 WP_002464870.1 ParB/RepB/Spo0J family partition protein -
  CKV88_RS01585 (SAMEA4384339_00319) - 384615..385499 (+) 885 WP_002464871.1 mechanosensitive ion channel family protein -
  CKV88_RS01590 (SAMEA4384339_00320) - 385526..385729 (+) 204 WP_002464872.1 DUF951 domain-containing protein -
  CKV88_RS01595 (SAMEA4384339_00321) ychF 385741..386838 (+) 1098 WP_002464873.1 redox-regulated ATPase YchF -
  CKV88_RS01600 (SAMEA4384339_00322) - 386949..387140 (-) 192 WP_002464874.1 hypothetical protein -
  CKV88_RS01605 (SAMEA4384339_00323) rpsF 387377..387673 (+) 297 WP_002464875.1 30S ribosomal protein S6 -
  CKV88_RS01610 (SAMEA4384339_00324) ssbA 387695..388198 (+) 504 WP_002464876.1 single-stranded DNA-binding protein Machinery gene
  CKV88_RS01615 (SAMEA4384339_00325) rpsR 388249..388491 (+) 243 WP_002464877.1 30S ribosomal protein S18 -
  CKV88_RS01620 (SAMEA4384339_00327) - 388997..389566 (+) 570 WP_002464878.1 PepSY domain-containing protein -
  CKV88_RS01625 (SAMEA4384339_00328) - 390017..390859 (+) 843 WP_002464879.1 aminoglycoside 6-adenylyltransferase -
  CKV88_RS01630 (SAMEA4384339_00329) - 390900..391157 (-) 258 WP_002464880.1 helix-turn-helix transcriptional regulator -
  CKV88_RS01635 (SAMEA4384339_00330) - 391445..391696 (+) 252 WP_002464881.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  CKV88_RS01640 (SAMEA4384339_00331) - 392472..393056 (+) 585 WP_002464882.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18570.22 Da        Isoelectric Point: 4.9366

>NTDB_id=1147623 CKV88_RS01610 WP_002464876.1 387695..388198(+) (ssbA) [Staphylococcus simiae strain NCTC13838]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQHNSGQRQQNEFQDYGQGFVGQQSGQNNSNNSVSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1147623 CKV88_RS01610 WP_002464876.1 387695..388198(+) (ssbA) [Staphylococcus simiae strain NCTC13838]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTCAATCGTACTTTTACGAATGCACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTTAATAACTATCTATCAAAAGGTAGCTTAGCTGGTGTAGATGGTCGCTTACAATCTCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCGAAGAA
CGCTCAACATAATAGTGGCCAACGTCAACAAAATGAATTCCAAGACTACGGTCAAGGATTTGTTGGTCAACAATCAGGAC
AAAACAATTCGAACAATAGTGTATCTAACACTAAACAATCAGATAATCCATTTGCGAATGCTAATGGACCTATCGATATT
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JL26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.537

100

0.695
  ssb Latilactobacillus sakei subsp. sakei 23K

55.556

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

63.473

0.377
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.371

Multiple sequence alignment