Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CKV75_RS09865 Genome accession   NZ_LT906456
Coordinates   2115738..2116892 (+) Length   384 a.a.
NCBI ID   WP_015674213.1    Uniprot ID   K0G6Q5
Organism   Actinobacillus suis strain NCTC12996     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2110738..2121892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV75_RS09830 (SAMEA4504061_02009) - 2111145..2111429 (+) 285 WP_039195515.1 putative quinol monooxygenase -
  CKV75_RS09835 (SAMEA4504061_02010) - 2111596..2112228 (+) 633 WP_015674208.1 tellurite resistance TerB family protein -
  CKV75_RS09840 (SAMEA4504061_02011) - 2112369..2112659 (+) 291 WP_005621765.1 YfcZ/YiiS family protein -
  CKV75_RS09845 (SAMEA4504061_02012) - 2112748..2113077 (+) 330 WP_015674209.1 DMT family transporter -
  CKV75_RS09850 (SAMEA4504061_02013) - 2113156..2113650 (-) 495 WP_015674210.1 hemerythrin domain-containing protein -
  CKV75_RS09855 (SAMEA4504061_02014) rfaD 2113976..2114902 (-) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  CKV75_RS09860 (SAMEA4504061_02015) def 2115042..2115554 (-) 513 WP_039195517.1 peptide deformylase -
  CKV75_RS09865 (SAMEA4504061_02016) dprA 2115738..2116892 (+) 1155 WP_015674213.1 DNA-processing protein DprA Machinery gene
  CKV75_RS09870 (SAMEA4504061_02017) - 2116937..2118943 (-) 2007 WP_015674214.1 OPT family oligopeptide transporter -
  CKV75_RS09875 (SAMEA4504061_02018) - 2119162..2120517 (-) 1356 WP_015674215.1 PTS ascorbate transporter subunit IIC -
  CKV75_RS09880 (SAMEA4504061_02019) - 2120526..2120798 (-) 273 WP_015674216.1 PTS sugar transporter subunit IIB -
  CKV75_RS09885 (SAMEA4504061_02020) secE 2121103..2121516 (+) 414 WP_039195520.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42929.22 Da        Isoelectric Point: 6.1054

>NTDB_id=1147551 CKV75_RS09865 WP_015674213.1 2115738..2116892(+) (dprA) [Actinobacillus suis strain NCTC12996]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEKRWIESALAWAEQPNQRLLTLFD
EEYPFLLRQISTAPPVLFVRGSISSLSLPQIAIVGSRDFSAYGEYWAGYFSEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNHPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPRQQALFETEQAVEKTQFFAKANMPNKVN
HFAKKLPEMTACQQQIVEHIGLNPISIDDLAKATALEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1147551 CKV75_RS09865 WP_015674213.1 2115738..2116892(+) (dprA) [Actinobacillus suis strain NCTC12996]
ATGTCACAGACTGATTTACTGAAATTATTACAAATCCCGCAATTGGGGGCGCAGCGAATTGCTCGCCTGTTATCCGAAGT
AGATTTCGCCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAACGCTGGT
TCAATCCGGAAAAGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACGTTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATTAGCACCGCACCGCCGGTGTTATTTGTGCGAGGTTCGATAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGCCGAGATTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTAGCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATCGGTATAGACGGCTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTGTATCCGGCAAGACATAAAAAATTGGCGGAACAGAT
TGTCGAAAGCGGTGGGGCGTTAGTATCGGAATTTTTTCCGAATCACCCGCCGCTTGCCGAGAATTTCCCGCGTCGTAATC
GAATTATCAGCGGCTTATCACTCGGTACATTAGTGGTGGAAGCCACGGTGAATAGCGGTTCACTGATTACCGCGCGCTAT
GCGTTGGAACAAGGGCGAGAAGTTTTTGCGCTCCCCAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTCTTAACCGAAACGATAGAGGATATTTTACAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCGTTATTTGAAACGGAACAAGCGGTCGAAAAAACACAATTTTTTGCAAAAGCCAATATGCCAAATAAGGTAAAT
CATTTTGCAAAAAAATTGCCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTAATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCGCATTGGAGGTGGAAACGCTATTAGTTGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0G6Q5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.541

99.219

0.74
  dprA Vibrio campbellii strain DS40M4

45.646

98.698

0.451
  dprA Haemophilus influenzae Rd KW20

48.703

90.365

0.44
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

37.337

99.74

0.372

Multiple sequence alignment