Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   CKV85_RS01825 Genome accession   NZ_LT906454
Coordinates   374636..375682 (+) Length   348 a.a.
NCBI ID   WP_017769010.1    Uniprot ID   A0A239WKI8
Organism   Streptococcus acidominimus strain NCTC11291     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 369636..380682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS01805 (SAMEA4504048_00378) amiF 369652..370581 (+) 930 WP_095121696.1 ATP-binding cassette domain-containing protein Regulator
  CKV85_RS12205 - 370657..370782 (+) 126 WP_269457197.1 hypothetical protein -
  CKV85_RS01810 (SAMEA4504048_00379) - 370889..372550 (+) 1662 WP_095121698.1 peptide ABC transporter substrate-binding protein -
  CKV85_RS01815 (SAMEA4504048_00380) - 372665..373579 (+) 915 WP_017769008.1 ABC transporter permease -
  CKV85_RS01820 (SAMEA4504048_00381) - 373590..374621 (+) 1032 WP_095121700.1 ABC transporter permease -
  CKV85_RS01825 (SAMEA4504048_00382) oppD 374636..375682 (+) 1047 WP_017769010.1 ABC transporter ATP-binding protein Regulator
  CKV85_RS01830 (SAMEA4504048_00383) amiF 375682..376614 (+) 933 WP_017769011.1 ABC transporter ATP-binding protein Regulator
  CKV85_RS01835 - 376988..378127 (-) 1140 Protein_345 transposase -
  CKV85_RS01840 (SAMEA4504048_00386) - 378221..379174 (-) 954 WP_095121550.1 IS30 family transposase -
  CKV85_RS01845 (SAMEA4504048_00387) rpsF 379585..379875 (+) 291 WP_017770045.1 30S ribosomal protein S6 -
  CKV85_RS01850 (SAMEA4504048_00388) ssb 379887..380372 (+) 486 WP_095121702.1 single-stranded DNA-binding protein Machinery gene
  CKV85_RS01855 (SAMEA4504048_00389) rpsR 380408..380647 (+) 240 WP_000068665.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38628.12 Da        Isoelectric Point: 4.8073

>NTDB_id=1147474 CKV85_RS01825 WP_017769010.1 374636..375682(+) (oppD) [Streptococcus acidominimus strain NCTC11291]
MTQETILQVKNLHVDFHTYAGEVKAIREVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSAKNADISGEILFKDRNLNEL
KEEEWVKIRGNEIAMIFQDPMTSLDPTMKIGMQIAEPIMLHEKISKKEALDRALELMKSVGIPNAEEHINDYPHQWSGGM
RQRAVIAVALAGNPEILIADEPTTALDVTIQAQILNLMKKIQEERSSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTASGSLQSIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPMFKVSETHYAATWLL
DERAPEVTPPPQILKRWNKWRTINGGDA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1147474 CKV85_RS01825 WP_017769010.1 374636..375682(+) (oppD) [Streptococcus acidominimus strain NCTC11291]
ATGACACAAGAAACTATTTTACAAGTCAAGAATCTTCATGTTGATTTCCATACTTACGCAGGCGAAGTCAAAGCGATTCG
TGAAGTCAATTTTGATCTTAAAAAAGGTGAAACATTAGCTATTGTAGGGGAATCAGGGTCTGGTAAATCGGTAACAACCA
AAACCTTGATGGGCTTATCAGCTAAGAATGCTGATATTTCCGGTGAAATTTTATTCAAAGATCGCAACCTTAACGAACTC
AAAGAAGAAGAGTGGGTTAAGATTCGTGGTAATGAAATTGCTATGATCTTCCAAGATCCAATGACCAGCTTGGACCCTAC
CATGAAGATTGGGATGCAGATTGCTGAACCTATTATGCTTCATGAGAAAATTTCCAAGAAGGAAGCCTTGGATCGCGCTC
TAGAGTTGATGAAAAGCGTTGGTATCCCGAATGCTGAAGAACACATTAATGATTACCCTCATCAATGGTCAGGTGGGATG
CGTCAACGTGCTGTTATCGCAGTTGCCCTTGCAGGCAATCCTGAAATTTTAATTGCTGATGAACCTACAACAGCTCTTGA
TGTGACCATTCAGGCACAGATCTTGAATTTGATGAAAAAAATTCAAGAGGAACGGTCGAGCTCTATCATCTTTATCACAC
ACGATTTGGGTGTTGTAGCTGGTATGGCAGACCGTGTAGCAGTCATGTATGCTGGTAAAATTGTAGAGTATGGTACAGTT
GATGAAGTCTTTTACAATCCGCAACATCCTTATACTTGGGGACTTCTAAATTCGATGCCAACAACAGATACAGCTTCAGG
TAGTTTGCAATCCATTCCGGGGACACCCCCAGATTTATTAAATCCACCTAAAGGTGATGCCTTTGCTGCTCGTAACGAGT
TTGCGCTCGATATTGACCATGAAGAAGAACCACCGATGTTTAAAGTCTCTGAGACGCATTATGCGGCTACATGGTTGTTA
GATGAAAGGGCTCCGGAAGTGACACCTCCACCACAAATTCTAAAACGTTGGAATAAATGGAGAACAATTAACGGAGGAGA
TGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239WKI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

81.739

99.138

0.81
  amiE Streptococcus salivarius strain HSISS4

55.362

99.138

0.549
  amiE Streptococcus thermophilus LMG 18311

55.856

95.69

0.534
  amiE Streptococcus thermophilus LMD-9

55.856

95.69

0.534

Multiple sequence alignment