Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   CKV84_RS09900 Genome accession   NZ_LT906452
Coordinates   2162566..2163372 (-) Length   268 a.a.
NCBI ID   WP_050598614.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157566..2168372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS09875 (SAMEA4040028_01960) - 2158006..2158656 (-) 651 WP_027220528.1 lysoplasmalogenase -
  CKV84_RS09880 (SAMEA4040028_01961) - 2158736..2159236 (-) 501 WP_027220529.1 hypothetical protein -
  CKV84_RS09885 (SAMEA4040028_01962) - 2159728..2160588 (+) 861 WP_027220530.1 polysaccharide deacetylase family protein -
  CKV84_RS09890 (SAMEA4040028_01963) - 2160706..2161902 (-) 1197 WP_011214245.1 murein transglycosylase A -
  CKV84_RS09895 (SAMEA4040028_01964) lpp1976 2162012..2162569 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  CKV84_RS09900 (SAMEA4040028_01965) lpp1977 2162566..2163372 (-) 807 WP_050598614.1 PilW family protein Machinery gene
  CKV84_RS09905 (SAMEA4040028_01966) lpp1978 2163311..2163625 (-) 315 WP_027220533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CKV84_RS09910 (SAMEA4040028_01967) hisC 2163785..2164894 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  CKV84_RS09915 (SAMEA4040028_01968) - 2164931..2165272 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CKV84_RS09925 (SAMEA4040028_01970) secF 2165450..2166367 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  CKV84_RS09930 (SAMEA4040028_01971) secD 2166380..2168236 (-) 1857 WP_027220537.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31474.68 Da        Isoelectric Point: 9.8676

>NTDB_id=1147445 CKV84_RS09900 WP_050598614.1 2162566..2163372(-) (lpp1977) [Legionella pneumophila strain NCTC11985]
MLRGLKKASQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKPQYLKTQERLEINFDLLWIGDLLRD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVTNFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLRFRYNEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRSVLDFAIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1147445 CKV84_RS09900 WP_050598614.1 2162566..2163372(-) (lpp1977) [Legionella pneumophila strain NCTC11985]
ATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATACCTAAAGACACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGAGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGA
CAAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTAAGCAATGGATATCAAATTACTTTAAAAAAACCACT
GCGGTTCCGGTACAACGAAATTGCTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATACATGAATTTTATGTTACCAGACGTCTT
ATCAAACAGAGGTCAGTATTGGATTTTGCAATTGGTAGCGATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

98.507

100

0.985
  lpp1977 Legionella pneumophila strain ERS1305867

97.761

100

0.978

Multiple sequence alignment