Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CKV84_RS09905 Genome accession   NZ_LT906452
Coordinates   2163311..2163625 (-) Length   104 a.a.
NCBI ID   WP_027220533.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158311..2168625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS09880 (SAMEA4040028_01961) - 2158736..2159236 (-) 501 WP_027220529.1 hypothetical protein -
  CKV84_RS09885 (SAMEA4040028_01962) - 2159728..2160588 (+) 861 WP_027220530.1 polysaccharide deacetylase family protein -
  CKV84_RS09890 (SAMEA4040028_01963) - 2160706..2161902 (-) 1197 WP_011214245.1 murein transglycosylase A -
  CKV84_RS09895 (SAMEA4040028_01964) lpp1976 2162012..2162569 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  CKV84_RS09900 (SAMEA4040028_01965) lpp1977 2162566..2163372 (-) 807 WP_050598614.1 PilW family protein Machinery gene
  CKV84_RS09905 (SAMEA4040028_01966) lpp1978 2163311..2163625 (-) 315 WP_027220533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CKV84_RS09910 (SAMEA4040028_01967) hisC 2163785..2164894 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  CKV84_RS09915 (SAMEA4040028_01968) - 2164931..2165272 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CKV84_RS09925 (SAMEA4040028_01970) secF 2165450..2166367 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  CKV84_RS09930 (SAMEA4040028_01971) secD 2166380..2168236 (-) 1857 WP_027220537.1 protein translocase subunit SecD -
  CKV84_RS09935 (SAMEA4040028_01972) yajC 2168258..2168593 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12249.39 Da        Isoelectric Point: 10.0591

>NTDB_id=1147446 CKV84_RS09905 WP_027220533.1 2163311..2163625(-) (lpp1978) [Legionella pneumophila strain NCTC11985]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=1147446 CKV84_RS09905 WP_027220533.1 2163311..2163625(-) (lpp1978) [Legionella pneumophila strain NCTC11985]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

100

100

1
  lpp1978 Legionella pneumophila str. Paris

98.077

100

0.981

Multiple sequence alignment