Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   CKV84_RS09895 Genome accession   NZ_LT906452
Coordinates   2162012..2162569 (-) Length   185 a.a.
NCBI ID   WP_027220531.1    Uniprot ID   A0AAP9BXV5
Organism   Legionella pneumophila strain NCTC11985     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157012..2167569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS09870 (SAMEA4040028_01959) - 2157307..2157846 (-) 540 WP_013101628.1 hypothetical protein -
  CKV84_RS09875 (SAMEA4040028_01960) - 2158006..2158656 (-) 651 WP_027220528.1 lysoplasmalogenase -
  CKV84_RS09880 (SAMEA4040028_01961) - 2158736..2159236 (-) 501 WP_027220529.1 hypothetical protein -
  CKV84_RS09885 (SAMEA4040028_01962) - 2159728..2160588 (+) 861 WP_027220530.1 polysaccharide deacetylase family protein -
  CKV84_RS09890 (SAMEA4040028_01963) - 2160706..2161902 (-) 1197 WP_011214245.1 murein transglycosylase A -
  CKV84_RS09895 (SAMEA4040028_01964) lpp1976 2162012..2162569 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  CKV84_RS09900 (SAMEA4040028_01965) lpp1977 2162566..2163372 (-) 807 WP_050598614.1 PilW family protein Machinery gene
  CKV84_RS09905 (SAMEA4040028_01966) lpp1978 2163311..2163625 (-) 315 WP_027220533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CKV84_RS09910 (SAMEA4040028_01967) hisC 2163785..2164894 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  CKV84_RS09915 (SAMEA4040028_01968) - 2164931..2165272 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CKV84_RS09925 (SAMEA4040028_01970) secF 2165450..2166367 (-) 918 WP_027220536.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21729.13 Da        Isoelectric Point: 6.7381

>NTDB_id=1147444 CKV84_RS09895 WP_027220531.1 2162012..2162569(-) (lpp1976) [Legionella pneumophila strain NCTC11985]
MKKTDSGFILLMTLCITFLMSLLVLASLQQILLQYKALNSQETFHQNFYQLEHWMMRLAHSPLLYAGMDCYLQKDYGANK
IANELVNNKGCLLILNQRKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGEYTIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1147444 CKV84_RS09895 WP_027220531.1 2162012..2162569(-) (lpp1976) [Legionella pneumophila strain NCTC11985]
ATGAAAAAAACCGATTCCGGTTTCATTCTGTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACAGATACTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTCGCTCATTCACCGTTATTGTATGCAGGTATGGATTGTTATCTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTAGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAGAAAATACAGATATTTTATTGAGGACCT
GAACGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATATACTATCATGCAACTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila strain ERS1305867

99.459

100

0.995
  lpp1976 Legionella pneumophila str. Paris

98.378

100

0.984

Multiple sequence alignment