Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKV84_RS02000 Genome accession   NZ_LT906452
Coordinates   429000..429479 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila strain NCTC11985     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 424000..434479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS01960 (SAMEA4040028_00387) rplO 424132..424566 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  CKV84_RS01965 (SAMEA4040028_00388) secY 424569..425897 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  CKV84_RS01970 rpmJ 425914..426027 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CKV84_RS01975 (SAMEA4040028_00389) rpsM 426105..426461 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  CKV84_RS01980 (SAMEA4040028_00390) rpsK 426485..426883 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CKV84_RS01985 (SAMEA4040028_00391) rpsD 426900..427520 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  CKV84_RS01990 (SAMEA4040028_00392) - 427539..428531 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  CKV84_RS01995 (SAMEA4040028_00393) rplQ 428550..428933 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  CKV84_RS02000 (SAMEA4040028_00394) ssb 429000..429479 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  CKV84_RS02005 (SAMEA4040028_00395) - 429566..430930 (-) 1365 WP_014840960.1 MFS transporter -
  CKV84_RS02010 (SAMEA4040028_00396) fabL 431092..431850 (+) 759 WP_014840961.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CKV84_RS02015 (SAMEA4040028_00397) - 431921..432334 (+) 414 WP_010946108.1 acyl carrier protein -
  CKV84_RS02020 (SAMEA4040028_00398) - 432334..433230 (+) 897 WP_014840962.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=1147418 CKV84_RS02000 WP_011213016.1 429000..429479(-) (ssb) [Legionella pneumophila strain NCTC11985]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1147418 CKV84_RS02000 WP_011213016.1 429000..429479(-) (ssb) [Legionella pneumophila strain NCTC11985]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAAGCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGATATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment