Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CKV79_RS09955 Genome accession   NZ_LT906451
Coordinates   2188282..2188947 (+) Length   221 a.a.
NCBI ID   WP_231950098.1    Uniprot ID   -
Organism   Legionella lansingensis strain NCTC12830     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2183282..2193947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS09935 (SAMEA44548918_02007) uvrC 2183593..2185449 (-) 1857 WP_028372665.1 excinuclease ABC subunit UvrC -
  CKV79_RS09940 (SAMEA44548918_02008) letA 2185506..2186165 (-) 660 WP_028372664.1 two-component system response regulator LetA Regulator
  CKV79_RS09945 (SAMEA44548918_02009) phhA 2186404..2187222 (-) 819 WP_028372663.1 phenylalanine 4-monooxygenase -
  CKV79_RS09950 (SAMEA44548918_02010) bioC 2187347..2188213 (-) 867 WP_028372662.1 malonyl-ACP O-methyltransferase BioC -
  CKV79_RS09955 (SAMEA44548918_02011) comFC 2188282..2188947 (+) 666 WP_231950098.1 ComF family protein Machinery gene
  CKV79_RS09960 (SAMEA44548918_02012) - 2188940..2190010 (-) 1071 WP_028372660.1 RIP metalloprotease -
  CKV79_RS09965 (SAMEA44548918_02013) - 2190022..2190297 (-) 276 WP_028372659.1 hypothetical protein -
  CKV79_RS09970 (SAMEA44548918_02014) hemA 2190565..2191824 (+) 1260 WP_028372658.1 glutamyl-tRNA reductase -
  CKV79_RS09975 (SAMEA44548918_02015) prfA 2191808..2192902 (+) 1095 WP_028372657.1 peptide chain release factor 1 -
  CKV79_RS09980 (SAMEA44548918_02016) prmC 2192889..2193737 (+) 849 WP_028372656.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25696.37 Da        Isoelectric Point: 9.7627

>NTDB_id=1147406 CKV79_RS09955 WP_231950098.1 2188282..2188947(+) (comFC) [Legionella lansingensis strain NCTC12830]
MLRLPSVCIVCYRYHREPYAVCKRCITLFTRLGPACHYCAFPLLDDQFLVCGRCSRTKPNFDQTLIAYRFEEPLRTLLHD
YKYNGALFLRHFLVKLMLDALPRPEIQTQCLVPVPLHPKRLRERGFNQAAELCKLLAKHLNIPCELTLCRKIHHTAPQAQ
LSGKERRRNLRHAFAVKPQQYKHITLVDDLLTTGSTVSELTKLFKKQGVHRVDVWCCARAT

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1147406 CKV79_RS09955 WP_231950098.1 2188282..2188947(+) (comFC) [Legionella lansingensis strain NCTC12830]
ATGTTACGTTTGCCCTCGGTATGTATCGTTTGTTATCGCTATCATCGTGAACCTTATGCCGTTTGCAAACGTTGCATAAC
ACTCTTCACACGACTAGGACCAGCTTGTCATTATTGTGCTTTTCCCTTACTCGATGATCAGTTTTTAGTATGTGGGCGTT
GCAGCAGAACAAAACCAAATTTTGATCAAACACTGATCGCATATCGCTTCGAAGAACCATTGCGCACTTTATTGCATGAC
TATAAATACAATGGTGCACTCTTTCTGCGTCATTTCTTGGTTAAATTAATGCTGGATGCGCTCCCTAGGCCTGAAATACA
AACACAATGCCTGGTTCCAGTTCCCTTACACCCTAAAAGGTTGCGCGAAAGAGGGTTTAATCAAGCTGCCGAGCTTTGCA
AGCTACTCGCAAAACATTTGAACATTCCGTGTGAGTTAACCTTGTGCAGAAAAATTCACCACACTGCACCTCAGGCCCAA
CTGAGTGGAAAAGAACGAAGGCGAAATTTACGTCATGCCTTTGCGGTAAAACCTCAGCAATATAAACATATTACTTTAGT
GGATGATTTACTCACCACTGGCAGCACTGTTTCGGAATTAACCAAGCTCTTCAAAAAACAGGGAGTACACCGTGTTGATG
TGTGGTGCTGTGCGCGTGCTACGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

55.909

99.548

0.557
  comFC Legionella pneumophila strain ERS1305867

58.115

86.425

0.502

Multiple sequence alignment