Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CKV79_RS09940 Genome accession   NZ_LT906451
Coordinates   2185506..2186165 (-) Length   219 a.a.
NCBI ID   WP_028372664.1    Uniprot ID   -
Organism   Legionella lansingensis strain NCTC12830     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2180506..2191165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS09920 (SAMEA44548918_02004) - 2180873..2181409 (-) 537 WP_028372667.1 hypothetical protein -
  CKV79_RS09925 (SAMEA44548918_02005) - 2181406..2182137 (-) 732 WP_028372666.1 L,D-transpeptidase -
  CKV79_RS09930 (SAMEA44548918_02006) - 2182448..2183479 (+) 1032 WP_035915127.1 alpha/beta fold hydrolase -
  CKV79_RS09935 (SAMEA44548918_02007) uvrC 2183593..2185449 (-) 1857 WP_028372665.1 excinuclease ABC subunit UvrC -
  CKV79_RS09940 (SAMEA44548918_02008) letA 2185506..2186165 (-) 660 WP_028372664.1 two-component system response regulator LetA Regulator
  CKV79_RS09945 (SAMEA44548918_02009) phhA 2186404..2187222 (-) 819 WP_028372663.1 phenylalanine 4-monooxygenase -
  CKV79_RS09950 (SAMEA44548918_02010) bioC 2187347..2188213 (-) 867 WP_028372662.1 malonyl-ACP O-methyltransferase BioC -
  CKV79_RS09955 (SAMEA44548918_02011) comFC 2188282..2188947 (+) 666 WP_231950098.1 ComF family protein Machinery gene
  CKV79_RS09960 (SAMEA44548918_02012) - 2188940..2190010 (-) 1071 WP_028372660.1 RIP metalloprotease -
  CKV79_RS09965 (SAMEA44548918_02013) - 2190022..2190297 (-) 276 WP_028372659.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24519.69 Da        Isoelectric Point: 5.6967

>NTDB_id=1147405 CKV79_RS09940 WP_028372664.1 2185506..2186165(-) (letA) [Legionella lansingensis strain NCTC12830]
MIKVLIVDDHALVRMGIRRLLEDLPDVEVVADAESGEQALTLVKSHKPDVVLLDMKMPGIDGWEVTRRLKKTHPQIKVIA
VTAVCSEPMPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAISSLEAPQESPFDLLSEREMQVMLMI
TSGMTVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTFLAMKHRVIEQPNDALHDE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1147405 CKV79_RS09940 WP_028372664.1 2185506..2186165(-) (letA) [Legionella lansingensis strain NCTC12830]
TTGATTAAAGTTCTAATTGTTGATGACCATGCCCTAGTAAGAATGGGGATTCGACGATTATTGGAAGATCTGCCTGATGT
AGAGGTGGTGGCTGACGCCGAGAGTGGTGAACAAGCTTTGACGTTAGTCAAATCACATAAGCCTGATGTTGTGTTGTTAG
ACATGAAAATGCCAGGCATAGATGGTTGGGAAGTAACAAGACGGCTTAAGAAAACGCATCCTCAAATAAAAGTTATTGCT
GTGACGGCGGTATGTAGTGAACCTATGCCTACACGTGTTCTACAACTAGGCGCCATGGGTTACTTGACAAAAGAGTCGGG
TGCGGAAGAAATGGCAGCAGCCATACGGAAAGTGGCTAAGGGCGAAAAATATCTCAGTGCTGAGATCGCACAAAAAATGG
CGATCAGTAGTTTAGAAGCACCTCAGGAGTCTCCTTTTGATTTATTATCCGAACGCGAGATGCAGGTGATGTTAATGATC
ACCAGTGGCATGACCGTTCAAGACATTGCGGATAGGTTATTTTTAAGCTCCAAGACGATTAATGGGTATCGATATCGTAT
GTTTGAAAAATTAGGAATAAAAAATGATGTCGAGCTAACATTTCTAGCCATGAAACATCGTGTTATTGAGCAGCCCAATG
ACGCCCTGCATGACGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

89.041

100

0.89
  letA Legionella pneumophila strain ERS1305867

89.041

100

0.89

Multiple sequence alignment