Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CKV71_RS12165 Genome accession   NZ_LT906447
Coordinates   2582002..2582526 (-) Length   174 a.a.
NCBI ID   WP_095107126.1    Uniprot ID   A0A239UJC1
Organism   Staphylococcus piscifermentans strain NCTC13836     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2577002..2587526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV71_RS12140 (SAMEA4384060_02492) - 2577428..2578594 (+) 1167 WP_095107116.1 ArgE/DapE family deacylase -
  CKV71_RS12145 (SAMEA4384060_02493) - 2578773..2579366 (-) 594 WP_095107118.1 histidine phosphatase family protein -
  CKV71_RS12150 (SAMEA4384060_02494) - 2579595..2580188 (-) 594 WP_095107120.1 hypothetical protein -
  CKV71_RS12155 (SAMEA4384060_02495) - 2580872..2581090 (-) 219 WP_095107122.1 hypothetical protein -
  CKV71_RS12160 (SAMEA4384060_02496) rpsR 2581703..2581945 (-) 243 WP_012664058.1 30S ribosomal protein S18 -
  CKV71_RS12165 (SAMEA4384060_02497) ssbA 2582002..2582526 (-) 525 WP_095107126.1 single-stranded DNA-binding protein Machinery gene
  CKV71_RS12170 (SAMEA4384060_02498) rpsF 2582549..2582845 (-) 297 WP_095107129.1 30S ribosomal protein S6 -
  CKV71_RS12175 (SAMEA4384060_02499) - 2582991..2584031 (-) 1041 WP_095107130.1 thermonuclease family protein -
  CKV71_RS12180 (SAMEA4384060_02500) - 2584187..2584444 (+) 258 WP_095107132.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  CKV71_RS12185 (SAMEA4384060_02501) - 2584438..2584776 (+) 339 WP_095107133.1 type II toxin-antitoxin system PemK/MazF family toxin -
  CKV71_RS12190 (SAMEA4384060_02502) argF 2584987..2585991 (+) 1005 WP_095103028.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19228.84 Da        Isoelectric Point: 5.2149

>NTDB_id=1147350 CKV71_RS12165 WP_095107126.1 2582002..2582526(-) (ssbA) [Staphylococcus piscifermentans strain NCTC13836]
MLNRVVLVGRLTRDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGGQQSGGGNNQFQDYGQSYGGQQQGQNTSSYQNQNSSKSGQSDNPFAN
ANGPIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1147350 CKV71_RS12165 WP_095107126.1 2582002..2582526(-) (ssbA) [Staphylococcus piscifermentans strain NCTC13836]
ATGCTTAACAGAGTTGTATTAGTAGGACGTTTAACTAGAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACCTTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAACAATTATTTGTTTAAAGGTAGTCTTGCCGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGTCGTATTTTTGTGACAGAAGTTGTATGTGATAGTGTTCAATTCCTTGAACCTAAGTC
ACAAAATCAACGTCACGGCGGCCAACAATCTGGAGGCGGTAATAACCAATTCCAAGATTATGGTCAAAGTTACGGTGGAC
AACAACAAGGTCAAAATACGTCATCTTATCAAAATCAAAATTCATCAAAATCTGGACAATCTGACAACCCATTTGCAAAT
GCAAACGGCCCGATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239UJC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.011

100

0.638
  ssb Latilactobacillus sakei subsp. sakei 23K

56

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.218

0.362
  ssb Vibrio cholerae strain A1552

35

100

0.362

Multiple sequence alignment