Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PPSQR21_RS25055 Genome accession   NZ_CP006872
Coordinates   5812631..5813122 (-) Length   163 a.a.
NCBI ID   WP_010346813.1    Uniprot ID   A0A3G8R109
Organism   Paenibacillus polymyxa SQR-21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5807631..5818122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPSQR21_RS25035 (PPSQR21_051520) opp4C 5808103..5809026 (-) 924 WP_016822456.1 oligopeptide ABC transporter permease -
  PPSQR21_RS25040 (PPSQR21_051530) - 5809038..5810000 (-) 963 WP_016822455.1 ABC transporter permease -
  PPSQR21_RS25045 (PPSQR21_051540) - 5810069..5811808 (-) 1740 WP_019689090.1 ABC transporter substrate-binding protein -
  PPSQR21_RS25050 (PPSQR21_051550) rpsR 5812337..5812609 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  PPSQR21_RS25055 (PPSQR21_051560) ssbA 5812631..5813122 (-) 492 WP_010346813.1 single-stranded DNA-binding protein Machinery gene
  PPSQR21_RS25060 (PPSQR21_051570) rpsF 5813172..5813456 (-) 285 WP_025366259.1 30S ribosomal protein S6 -
  PPSQR21_RS25065 (PPSQR21_051580) - 5813775..5813969 (+) 195 WP_013373906.1 YjzC family protein -
  PPSQR21_RS25070 (PPSQR21_051590) - 5814336..5814653 (+) 318 WP_025366260.1 hypothetical protein -
  PPSQR21_RS25080 (PPSQR21_051610) - 5815029..5815253 (-) 225 WP_016822452.1 DUF951 domain-containing protein -
  PPSQR21_RS25085 (PPSQR21_051620) - 5815243..5816193 (-) 951 WP_019689092.1 mechanosensitive ion channel family protein -
  PPSQR21_RS25090 (PPSQR21_051630) yyaC 5816444..5817046 (+) 603 WP_019689093.1 spore protease YyaC -
  PPSQR21_RS25095 (PPSQR21_051640) - 5817000..5817521 (-) 522 WP_016822449.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17928.67 Da        Isoelectric Point: 4.8369

>NTDB_id=114720 PPSQR21_RS25055 WP_010346813.1 5812631..5813122(-) (ssbA) [Paenibacillus polymyxa SQR-21]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDSGNGGGNSGGGMREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=114720 PPSQR21_RS25055 WP_010346813.1 5812631..5813122(-) (ssbA) [Paenibacillus polymyxa SQR-21]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACAAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGTAAAGGTCGTTTGACGGCTGTTGAAGGCCGTGTACAAGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTACGTTTCTTGGAATCTAACCG
CGATAGCGGCAACGGTGGCGGCAATAGCGGTGGAGGTATGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GGCGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8R109

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.116

100

0.638
  ssb Latilactobacillus sakei subsp. sakei 23K

50.292

100

0.528
  ssb Neisseria meningitidis MC58

34.615

100

0.386
  ssb Neisseria gonorrhoeae MS11

33.714

100

0.362

Multiple sequence alignment