Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | CKV83_RS11090 | Genome accession | NZ_LT906439 |
| Coordinates | 2359523..2360476 (+) | Length | 317 a.a. |
| NCBI ID | WP_026217003.1 | Uniprot ID | - |
| Organism | Streptococcus merionis strain NCTC13788 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2354523..2365476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV83_RS11050 (SAMEA4412692_02208) | - | 2355221..2355577 (+) | 357 | WP_018374185.1 | DUF1033 family protein | - |
| CKV83_RS11055 (SAMEA4412692_02209) | comYA | 2355699..2356640 (+) | 942 | WP_018374186.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CKV83_RS11060 (SAMEA4412692_02210) | comYB | 2356570..2357604 (+) | 1035 | WP_018374187.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CKV83_RS11065 (SAMEA4412692_02211) | comGC/cglC | 2357604..2357906 (+) | 303 | WP_018374188.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CKV83_RS11070 (SAMEA4412692_02212) | comGD | 2357866..2358312 (+) | 447 | WP_331711864.1 | competence type IV pilus minor pilin ComGD | - |
| CKV83_RS11075 (SAMEA4412692_02213) | comGE | 2358305..2358577 (+) | 273 | WP_018374190.1 | competence type IV pilus minor pilin ComGE | - |
| CKV83_RS11080 (SAMEA4412692_02214) | comGF | 2358555..2358998 (+) | 444 | WP_018374191.1 | competence type IV pilus minor pilin ComGF | - |
| CKV83_RS11085 (SAMEA4412692_02215) | comGG | 2358976..2359503 (+) | 528 | WP_018374192.1 | competence type IV pilus minor pilin ComGG | - |
| CKV83_RS11090 (SAMEA4412692_02216) | comYH | 2359523..2360476 (+) | 954 | WP_026217003.1 | class I SAM-dependent methyltransferase | Machinery gene |
| CKV83_RS11095 (SAMEA4412692_02217) | - | 2360533..2361723 (+) | 1191 | WP_018374194.1 | acetate kinase | - |
| CKV83_RS11100 (SAMEA4412692_02218) | - | 2362109..2363455 (+) | 1347 | WP_018374195.1 | APC family permease | - |
| CKV83_RS11105 (SAMEA4412692_02219) | - | 2363514..2364686 (-) | 1173 | WP_018374196.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CKV83_RS11110 (SAMEA4412692_02220) | - | 2364790..2365308 (+) | 519 | WP_018374197.1 | DUF536 domain-containing protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36112.41 Da Isoelectric Point: 5.2353
>NTDB_id=1147166 CKV83_RS11090 WP_026217003.1 2359523..2360476(+) (comYH) [Streptococcus merionis strain NCTC13788]
MNFEKIEAAYELMLENIQLLQNQLTTNIYDAMIEQNMAYINSERTDKTILKNNANLKKMALSKEEWRRVYQFLFIKANQT
EPLQYNHQFTPDSIGFILSFIMDSLLSEEQLEILEIGSGTGNLANTLLNNSQKKLDYLGIELDDLLIDLSASMAEVMGAD
LHFVQGDAVRPQLLKPSDVIFSDLPVGYYPDDRIASRFSLAAKEGHTYAHHLLMAQSIKYLKSGGYAIFLAPNNLLTSAQ
SSLLKHWLKAEAQLIAMVSLPETLFGKKELAKSIFVFQKQDEEKQEAFVYPLKSLQDPEILRHFSQSFKKWASENAK
MNFEKIEAAYELMLENIQLLQNQLTTNIYDAMIEQNMAYINSERTDKTILKNNANLKKMALSKEEWRRVYQFLFIKANQT
EPLQYNHQFTPDSIGFILSFIMDSLLSEEQLEILEIGSGTGNLANTLLNNSQKKLDYLGIELDDLLIDLSASMAEVMGAD
LHFVQGDAVRPQLLKPSDVIFSDLPVGYYPDDRIASRFSLAAKEGHTYAHHLLMAQSIKYLKSGGYAIFLAPNNLLTSAQ
SSLLKHWLKAEAQLIAMVSLPETLFGKKELAKSIFVFQKQDEEKQEAFVYPLKSLQDPEILRHFSQSFKKWASENAK
Nucleotide
Download Length: 954 bp
>NTDB_id=1147166 CKV83_RS11090 WP_026217003.1 2359523..2360476(+) (comYH) [Streptococcus merionis strain NCTC13788]
ATGAATTTTGAAAAAATCGAAGCAGCTTATGAGCTGATGTTAGAAAATATCCAGTTGCTCCAAAACCAGCTGACAACTAA
TATCTACGATGCCATGATTGAACAGAATATGGCCTATATCAATAGTGAACGTACGGACAAAACCATTCTCAAAAACAATG
CTAACCTGAAAAAGATGGCTTTATCCAAGGAAGAATGGCGCCGTGTCTACCAATTTCTCTTTATCAAAGCTAACCAGACC
GAACCTTTGCAGTACAATCATCAGTTTACTCCAGATAGCATTGGTTTTATCTTATCTTTTATCATGGATAGTTTGCTGAG
TGAGGAACAGCTCGAAATCTTAGAAATCGGCTCAGGAACGGGAAATCTAGCGAATACCCTTTTGAACAATAGCCAGAAAA
AGCTGGATTACCTAGGAATTGAGCTGGATGATCTTTTGATTGACCTTTCTGCCAGTATGGCTGAGGTCATGGGTGCAGAT
CTTCACTTTGTCCAAGGAGATGCAGTGCGACCTCAGTTGCTCAAGCCGTCGGATGTGATTTTCTCAGATTTGCCTGTAGG
CTATTATCCAGATGATCGCATTGCTAGTCGTTTTAGCTTGGCTGCCAAGGAAGGTCACACCTATGCCCATCATCTGTTGA
TGGCTCAATCCATTAAGTATCTCAAATCTGGTGGCTATGCCATTTTCCTTGCACCCAATAATCTTTTAACCAGCGCCCAG
AGCTCTCTTTTAAAACATTGGCTTAAAGCTGAAGCCCAGCTAATCGCTATGGTGAGTTTACCAGAGACACTTTTTGGAAA
AAAAGAGTTGGCTAAATCCATCTTTGTTTTCCAAAAGCAGGATGAAGAGAAGCAAGAAGCCTTTGTCTATCCTCTGAAAA
GCTTACAAGATCCGGAGATTTTACGGCATTTTAGCCAGAGTTTTAAAAAATGGGCGTCTGAGAATGCAAAATAG
ATGAATTTTGAAAAAATCGAAGCAGCTTATGAGCTGATGTTAGAAAATATCCAGTTGCTCCAAAACCAGCTGACAACTAA
TATCTACGATGCCATGATTGAACAGAATATGGCCTATATCAATAGTGAACGTACGGACAAAACCATTCTCAAAAACAATG
CTAACCTGAAAAAGATGGCTTTATCCAAGGAAGAATGGCGCCGTGTCTACCAATTTCTCTTTATCAAAGCTAACCAGACC
GAACCTTTGCAGTACAATCATCAGTTTACTCCAGATAGCATTGGTTTTATCTTATCTTTTATCATGGATAGTTTGCTGAG
TGAGGAACAGCTCGAAATCTTAGAAATCGGCTCAGGAACGGGAAATCTAGCGAATACCCTTTTGAACAATAGCCAGAAAA
AGCTGGATTACCTAGGAATTGAGCTGGATGATCTTTTGATTGACCTTTCTGCCAGTATGGCTGAGGTCATGGGTGCAGAT
CTTCACTTTGTCCAAGGAGATGCAGTGCGACCTCAGTTGCTCAAGCCGTCGGATGTGATTTTCTCAGATTTGCCTGTAGG
CTATTATCCAGATGATCGCATTGCTAGTCGTTTTAGCTTGGCTGCCAAGGAAGGTCACACCTATGCCCATCATCTGTTGA
TGGCTCAATCCATTAAGTATCTCAAATCTGGTGGCTATGCCATTTTCCTTGCACCCAATAATCTTTTAACCAGCGCCCAG
AGCTCTCTTTTAAAACATTGGCTTAAAGCTGAAGCCCAGCTAATCGCTATGGTGAGTTTACCAGAGACACTTTTTGGAAA
AAAAGAGTTGGCTAAATCCATCTTTGTTTTCCAAAAGCAGGATGAAGAGAAGCAAGAAGCCTTTGTCTATCCTCTGAAAA
GCTTACAAGATCCGGAGATTTTACGGCATTTTAGCCAGAGTTTTAAAAAATGGGCGTCTGAGAATGCAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.392 |
99.685 |
0.612 |
| comYH | Streptococcus mutans UA159 |
61.076 |
99.685 |
0.609 |