Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   CKV83_RS00105 Genome accession   NZ_LT906439
Coordinates   22081..22737 (-) Length   218 a.a.
NCBI ID   WP_026216953.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17081..27737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS00085 (SAMEA4412692_00017) - 19058..19756 (+) 699 WP_026216952.1 YutD-like domain-containing protein -
  CKV83_RS00090 (SAMEA4412692_00018) rlmN 19939..21021 (+) 1083 WP_018373670.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  CKV83_RS00095 (SAMEA4412692_00019) - 21021..21551 (+) 531 WP_018373671.1 VanZ family protein -
  CKV83_RS11355 (SAMEA4412692_00020) - 21563..21709 (+) 147 WP_156809073.1 hypothetical protein -
  CKV83_RS00100 (SAMEA4412692_00021) - 21795..22079 (+) 285 WP_051071091.1 VanZ family protein -
  CKV83_RS00105 (SAMEA4412692_00022) cclA/cilC 22081..22737 (-) 657 WP_026216953.1 A24 family peptidase Machinery gene
  CKV83_RS00110 (SAMEA4412692_00023) - 22992..23492 (+) 501 WP_018373673.1 DNA starvation/stationary phase protection protein -
  CKV83_RS11660 (SAMEA4412692_00024) - 23809..24336 (-) 528 WP_095114550.1 IS630 family transposase -
  CKV83_RS11665 (SAMEA4412692_00025) - 24326..24652 (-) 327 WP_095114551.1 IS630 transposase-related protein -
  CKV83_RS00125 (SAMEA4412692_00026) ahpC 25058..25621 (+) 564 WP_018372922.1 alkyl hydroperoxide reductase subunit C -
  CKV83_RS00130 (SAMEA4412692_00027) ahpF 25632..27164 (+) 1533 WP_018372923.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24916.86 Da        Isoelectric Point: 7.4116

>NTDB_id=1147113 CKV83_RS00105 WP_026216953.1 22081..22737(-) (cclA/cilC) [Streptococcus merionis strain NCTC13788]
MTEFLLFMMGASFGSFFGLVIVRFPEQSIISPASHCDLCQQQLAYQDLIPIFSQLINRFRCRFCKKSFAPWYWLLELVCG
FTFLFASHGFLTWTELLLTYAGLLLSCYDCKNQTYPLMVWLVFFMMTSILSPWNTITFACLLLAGLAQLGFIKMGAGDFL
YLASISLSFDLQELLWLLQIACLTAIFYYLVSKRCASIPFVPFLFLGFLLVLGIGKWG

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1147113 CKV83_RS00105 WP_026216953.1 22081..22737(-) (cclA/cilC) [Streptococcus merionis strain NCTC13788]
ATGACAGAGTTTTTATTATTTATGATGGGAGCTAGTTTCGGGTCCTTTTTTGGCCTAGTTATCGTGCGCTTTCCTGAACA
ATCTATCATCAGCCCAGCTAGCCATTGTGATCTTTGCCAGCAACAGTTGGCCTATCAAGACCTGATTCCCATCTTTTCTC
AGCTCATCAATCGCTTTCGTTGTCGCTTTTGCAAAAAATCATTTGCCCCTTGGTACTGGCTTTTGGAGCTAGTTTGTGGC
TTTACTTTTCTCTTTGCCAGTCATGGCTTCCTTACCTGGACAGAGTTGCTGCTTACCTATGCTGGTCTACTCTTAAGCTG
TTATGATTGCAAAAACCAGACCTATCCACTGATGGTCTGGTTAGTTTTCTTCATGATGACGAGCATTTTATCCCCTTGGA
ACACAATCACTTTTGCTTGTCTGCTTTTGGCAGGGTTGGCCCAATTGGGCTTTATAAAGATGGGAGCGGGAGATTTTCTC
TATCTGGCCAGCATCAGCCTATCCTTTGACCTGCAAGAACTCCTTTGGCTTTTGCAAATCGCCTGTCTTACAGCTATTTT
CTATTATCTTGTCAGCAAAAGATGCGCCAGTATTCCGTTTGTTCCCTTTCTCTTCTTAGGATTTCTTCTTGTTTTAGGCA
TTGGAAAATGGGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50.725

94.954

0.482
  cclA/cilC Streptococcus pneumoniae TIGR4

49.528

97.248

0.482
  cclA/cilC Streptococcus pneumoniae Rx1

49.275

94.954

0.468
  cclA/cilC Streptococcus pneumoniae D39

49.275

94.954

0.468
  cclA/cilC Streptococcus pneumoniae R6

49.275

94.954

0.468
  cclA/cilC Streptococcus mitis NCTC 12261

47.343

94.954

0.45

Multiple sequence alignment