Detailed information NTG1146935

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CKV66_RS04120
• Genome accession: NZ_LT906434
• Coordinates: 903065..903931 (+)
• Length: 288 a.a.
• NCBI ID: WP_408633884.1
• Uniprot ID: -
• Organism: Neisseria zoodegmatis strain NCTC12230
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 898065..908931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV66_RS12510	-	898122..898303 (+)	182	Protein_798	lipoprotein signal peptidase	-
CKV66_RS04100 (SAMEA4504057_00805)	-	898406..899038 (-)	633	WP_085364432.1	isochorismatase family protein	-
CKV66_RS04110 (SAMEA4504057_00807)	pilF	900117..901796 (+)	1680	WP_085364433.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CKV66_RS04115 (SAMEA4504057_00808)	pilG	901827..903065 (+)	1239	WP_085364434.1	type II secretion system F family protein	Machinery gene
CKV66_RS04120 (SAMEA4504057_00809)	pilD	903065..903931 (+)	867	WP_408633884.1	prepilin peptidase	Machinery gene
CKV66_RS04125 (SAMEA4504057_00810)	coaE	903935..904558 (+)	624	WP_085364436.1	dephospho-CoA kinase	-
CKV66_RS04130 (SAMEA4504057_00811)	zapD	904555..905325 (+)	771	WP_085364437.1	cell division protein ZapD	-
CKV66_RS04135 (SAMEA4504057_00812)	yacG	905329..905511 (+)	183	WP_085364438.1	DNA gyrase inhibitor YacG	-
CKV66_RS04145 (SAMEA4504057_00814)	ubiD	905960..907438 (+)	1479	WP_085364439.1	4-hydroxy-3-polyprenylbenzoate decarboxylase	-
CKV66_RS04150 (SAMEA4504057_00815)	-	907773..908849 (-)	1077	WP_085364440.1	selenocysteine synthase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31630.96 Da
• Isoelectric Point: 7.9305

>NTDB_id=1146935 CKV66_RS04120 WP_408633884.1 903065..903931(+) (pilD) [Neisseria zoodegmatis strain NCTC12230]
MMWAIFQELAPFAVLLSLLFGLLVGSFLNVVIYRVPVMMERNWTLFAKDHLNLDISAEESAPFNLIKPDSRCPKCHAPVK
PWQNIPIISYLLLGGKCGSCKTPISKRYPLVELLTGVLFAAVAWKYGWSWITFGGLIFTAMLVALAFIDADTQYLPDQLT
LPLIWLGLIFNIDGSFVPLTSAVWGAVCGYMSLWLLCYIYKILTGKIGMGGGDFKLLAALGAWLGVGVLPILVFMAAVIG
IIVALIMRIAKGQEFAFGPSLAIAGWIIFIANEQVISLTSWWLTASGF

Nucleotide

• Length: 867 bp

>NTDB_id=1146935 CKV66_RS04120 WP_408633884.1 903065..903931(+) (pilD) [Neisseria zoodegmatis strain NCTC12230]
ATGATGTGGGCTATATTTCAAGAGCTGGCACCTTTTGCGGTGCTGCTTTCTTTGTTGTTTGGTCTGTTGGTAGGCAGCTT
TTTGAATGTTGTTATTTACCGTGTTCCAGTAATGATGGAACGAAATTGGACGCTGTTTGCCAAAGACCATTTGAATTTGG
ATATCTCAGCTGAAGAATCTGCTCCGTTCAATTTAATCAAACCTGATTCCAGATGCCCTAAGTGCCATGCCCCTGTGAAA
CCGTGGCAAAACATCCCCATCATCAGCTATCTGTTGTTAGGAGGAAAATGTGGTTCCTGCAAAACGCCGATTAGCAAACG
CTATCCTTTAGTTGAACTGTTAACGGGTGTATTGTTTGCAGCGGTTGCTTGGAAATATGGTTGGAGTTGGATTACCTTCG
GCGGTTTGATCTTTACAGCTATGCTGGTAGCACTGGCTTTTATTGATGCAGACACCCAATATCTGCCGGATCAATTGACT
TTGCCTCTAATATGGCTCGGGCTGATTTTTAATATAGACGGTTCGTTTGTGCCGCTGACTTCCGCAGTTTGGGGAGCGGT
TTGCGGTTATATGAGCTTATGGCTGCTGTGTTATATTTATAAAATCTTAACCGGCAAAATCGGTATGGGGGGCGGGGACT
TCAAATTATTGGCGGCCCTTGGTGCATGGTTGGGAGTAGGTGTGTTGCCTATATTGGTATTCATGGCCGCTGTAATCGGC
ATTATAGTGGCGCTGATTATGCGGATCGCCAAAGGGCAGGAGTTTGCATTTGGCCCCAGCTTGGCAATCGCCGGATGGAT
TATATTCATTGCCAACGAGCAGGTGATATCATTAACATCATGGTGGTTAACTGCTTCAGGGTTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	70.29	95.833	0.674
pilD	Vibrio cholerae strain A1552	48	95.486	0.458
pilD	Vibrio campbellii strain DS40M4	44.406	99.306	0.441
pilD	Acinetobacter nosocomialis M2	46.947	90.972	0.427
pilD	Acinetobacter baumannii D1279779	46.565	90.972	0.424