Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CKV66_RS02775 Genome accession   NZ_LT906434
Coordinates   599332..601488 (-) Length   718 a.a.
NCBI ID   WP_085363304.1    Uniprot ID   -
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 594332..606488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS02760 (SAMEA4504057_00545) acnB 594415..597000 (+) 2586 WP_085363301.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase -
  CKV66_RS02765 (SAMEA4504057_00546) aroB 597408..598487 (-) 1080 WP_085363302.1 3-dehydroquinate synthase -
  CKV66_RS02770 (SAMEA4504057_00547) - 598729..599274 (-) 546 WP_085363303.1 shikimate kinase -
  CKV66_RS02775 (SAMEA4504057_00548) pilQ 599332..601488 (-) 2157 WP_085363304.1 type IV pilus secretin PilQ Machinery gene
  CKV66_RS02780 (SAMEA4504057_00549) pilP 601501..602034 (-) 534 WP_085363305.1 pilus assembly protein PilP Machinery gene
  CKV66_RS02785 (SAMEA4504057_00550) - 602052..602696 (-) 645 WP_085363306.1 type 4a pilus biogenesis protein PilO -
  CKV66_RS02790 (SAMEA4504057_00551) - 602698..603315 (-) 618 WP_085363307.1 PilN domain-containing protein -
  CKV66_RS02795 (SAMEA4504057_00552) pilM 603317..604414 (-) 1098 WP_085363308.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 78473.22 Da        Isoelectric Point: 9.6272

>NTDB_id=1146926 CKV66_RS02775 WP_085363304.1 599332..601488(-) (pilQ) [Neisseria zoodegmatis strain NCTC12230]
MNSRNITKIFSAITIGFAVQTACAGNITDINVSSLPDNQKIIKIKFDKDVTAPRGFVTSTPARIALDFAGTSIQLPQPVL
EYADPLLNQITAAQNDNRARILLGLNKASQYNTEIKGDEVWVYISEAINKTSNMPQQSVSTPAAIKSAPAKSEQIAVSAN
IDFRKGSRNSGIVELNAPSFTGEPEIKKQSDRITITLKNYPLPTQAQRSLDVADFNTPVRNVTIKRIGNNTQLIIRNQGS
WDVQTQGAHGRYSFEVVRKANISAQGLANTPQKSFNGRKISLDFQDVEVRTILQILAKESGMNIVASDTVNGKMTLSLKD
VPWDQALDLVMQARNLDMRRQGNIINVAPREELLAKDKATLQAQKEIDDLGPLLSQTFQLKYKNVEEFRKILRLDESGSN
NDRNSMLSGRGSALIDPATNTLIITDNRHVIQKFQKLIDELDVPTRQVMVEARIVEANDDFSRDIGVKFGATGVKGASSW
GSDWTNAVNNYGTEVNNRRTIANAILSGSNTLPSTTPLQMNPNISLPITSATTSIALVRAISSGALGLELTAMQEQSRGK
IISNPRVLTQDRKEAMIESGSEIPYEEATSSGATSITFKKAVLGLTVTPNITPDGQVIMTVKINKDSPTDCISGGVTTKC
ITTKQLQTQAMVEDGGTLIVGGIYEEENGNTVSKVPLLGDIPVVGNLFKSRTRKERRRELLIFITPRIMDNVGSNLRY

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=1146926 CKV66_RS02775 WP_085363304.1 599332..601488(-) (pilQ) [Neisseria zoodegmatis strain NCTC12230]
ATGAACTCACGCAACATTACAAAGATTTTTTCAGCCATCACCATCGGCTTTGCCGTTCAGACGGCCTGCGCAGGCAATAT
TACTGATATCAACGTATCCTCTCTGCCTGACAATCAAAAAATTATCAAAATCAAATTCGATAAAGACGTTACCGCTCCTC
GCGGCTTTGTAACCAGCACTCCTGCGCGTATTGCACTGGACTTCGCCGGCACCTCCATCCAACTGCCGCAACCGGTTTTG
GAATATGCAGATCCTTTATTGAATCAAATTACTGCGGCGCAAAACGATAATCGTGCACGCATTTTATTGGGTTTGAATAA
AGCCAGCCAATACAACACCGAAATCAAAGGTGATGAGGTTTGGGTGTATATCAGTGAAGCCATTAATAAAACGAGCAACA
TGCCGCAACAAAGCGTGTCCACTCCTGCCGCAATCAAATCAGCACCGGCAAAAAGCGAGCAGATTGCCGTTTCTGCCAAT
ATTGATTTCCGCAAAGGCTCTCGAAATTCAGGCATTGTGGAATTGAACGCCCCTTCCTTTACCGGTGAACCTGAAATCAA
AAAACAAAGCGATAGAATCACCATTACTCTGAAAAACTACCCGCTTCCTACCCAAGCGCAACGTAGTTTAGATGTGGCCG
ACTTCAATACGCCCGTTCGCAACGTAACCATCAAACGTATTGGCAACAACACCCAGCTCATTATCCGTAACCAAGGCAGC
TGGGATGTACAAACACAAGGTGCTCACGGACGCTATAGCTTTGAAGTAGTTAGAAAAGCCAATATTTCCGCTCAAGGCCT
GGCAAACACACCGCAAAAATCATTTAACGGACGCAAAATTTCTTTGGATTTCCAAGATGTGGAAGTACGAACCATTCTGC
AAATCCTGGCAAAAGAGTCCGGCATGAACATCGTTGCCAGCGACACGGTAAACGGCAAAATGACCCTGTCGCTCAAAGAC
GTTCCTTGGGATCAAGCACTCGACTTGGTCATGCAAGCCCGCAACCTTGATATGCGCCGCCAAGGCAATATCATCAACGT
TGCTCCACGTGAAGAGTTATTGGCCAAAGACAAAGCTACCCTGCAAGCTCAGAAAGAAATTGATGACTTGGGTCCCTTGC
TGTCTCAAACTTTCCAGCTCAAATATAAAAATGTGGAAGAATTCCGCAAAATCTTGCGCCTTGATGAGAGTGGTAGCAAC
AACGACCGCAACAGCATGTTGAGCGGAAGAGGCAGTGCGCTGATTGATCCTGCTACCAACACACTGATTATTACGGACAA
CCGCCACGTCATTCAAAAATTCCAAAAATTGATTGACGAATTGGATGTGCCAACCCGCCAAGTGATGGTGGAAGCCCGTA
TTGTAGAAGCCAATGATGATTTTTCTCGTGATATCGGCGTGAAGTTTGGTGCTACTGGTGTGAAGGGAGCGAGCAGCTGG
GGTTCTGATTGGACAAATGCGGTAAACAACTACGGCACAGAAGTGAACAACCGCCGTACCATTGCCAATGCCATCTTAAG
CGGGTCTAACACCCTTCCTTCCACAACTCCGCTCCAAATGAACCCGAATATCAGCTTGCCGATTACTTCTGCGACAACCA
GCATCGCATTGGTTCGTGCGATTTCGTCGGGTGCTTTGGGCTTGGAATTGACCGCGATGCAAGAGCAAAGCAGAGGTAAA
ATCATTTCCAACCCGCGCGTGTTAACCCAAGACCGCAAAGAAGCCATGATTGAATCAGGCTCTGAAATCCCTTACGAAGA
GGCTACATCAAGCGGCGCCACTTCTATTACGTTCAAAAAGGCTGTGTTGGGTTTAACTGTTACGCCTAATATCACGCCGG
ACGGGCAAGTCATCATGACGGTGAAAATCAACAAAGACAGCCCAACCGACTGTATATCCGGCGGCGTGACGACCAAATGT
ATTACCACCAAACAACTCCAAACCCAAGCCATGGTTGAAGATGGAGGTACACTCATTGTCGGTGGTATTTACGAAGAAGA
AAACGGCAATACAGTGAGCAAAGTGCCCCTGCTGGGTGACATTCCGGTGGTAGGCAATCTGTTCAAATCACGTACCCGCA
AAGAACGTCGTCGCGAACTGCTGATTTTCATTACTCCGCGCATTATGGATAATGTAGGCAGCAACTTACGCTACTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(552-710)

AMIN domain (AMIN)

(37-115)

Secretin and TonB N terminus short domain (STN)

(303-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

58.238

100

0.635
  pilQ Neisseria gonorrhoeae strain FA1090

60.403

100

0.627
  pilQ Neisseria meningitidis MC58

65.248

78.552

0.513

Multiple sequence alignment