Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CKV66_RS02780 Genome accession   NZ_LT906434
Coordinates   601501..602034 (-) Length   177 a.a.
NCBI ID   WP_085363305.1    Uniprot ID   A0A1X3CRX8
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 596501..607034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS02765 (SAMEA4504057_00546) aroB 597408..598487 (-) 1080 WP_085363302.1 3-dehydroquinate synthase -
  CKV66_RS02770 (SAMEA4504057_00547) - 598729..599274 (-) 546 WP_085363303.1 shikimate kinase -
  CKV66_RS02775 (SAMEA4504057_00548) pilQ 599332..601488 (-) 2157 WP_085363304.1 type IV pilus secretin PilQ Machinery gene
  CKV66_RS02780 (SAMEA4504057_00549) pilP 601501..602034 (-) 534 WP_085363305.1 pilus assembly protein PilP Machinery gene
  CKV66_RS02785 (SAMEA4504057_00550) - 602052..602696 (-) 645 WP_085363306.1 type 4a pilus biogenesis protein PilO -
  CKV66_RS02790 (SAMEA4504057_00551) - 602698..603315 (-) 618 WP_085363307.1 PilN domain-containing protein -
  CKV66_RS02795 (SAMEA4504057_00552) pilM 603317..604414 (-) 1098 WP_085363308.1 type IV pilus assembly protein PilM -
  CKV66_RS02800 (SAMEA4504057_00553) - 604565..607033 (+) 2469 WP_085363309.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19471.90 Da        Isoelectric Point: 9.2765

>NTDB_id=1146927 CKV66_RS02780 WP_085363305.1 601501..602034(-) (pilP) [Neisseria zoodegmatis strain NCTC12230]
MKKTLLLAGILAASACTSSHDDLSQWMKETRQQAKSKIIPFEAPAAIQAKTYTTPNFNGLNAFDSKRLIAMQQGANAPNN
NRPKEILESFSLENLKYVGSLTKGKQTSGYIEANGHVYTVLPGNYIGQNHGRIQSIIADKILITELVEDSNGNWTYRKAE
LLLSSSDNNRDAAQNNN

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1146927 CKV66_RS02780 WP_085363305.1 601501..602034(-) (pilP) [Neisseria zoodegmatis strain NCTC12230]
ATGAAAAAAACACTACTACTCGCAGGCATATTGGCTGCTTCCGCCTGCACATCGTCTCATGATGACTTAAGCCAATGGAT
GAAAGAAACACGGCAACAGGCCAAATCAAAAATTATTCCTTTTGAAGCACCTGCTGCCATTCAGGCCAAAACTTATACAA
CACCCAATTTTAACGGGCTTAACGCTTTTGACAGCAAACGGCTGATTGCCATGCAGCAGGGAGCAAATGCACCTAACAAC
AACAGACCTAAAGAAATTCTCGAAAGCTTCAGTTTAGAGAATCTCAAATATGTCGGCAGCCTGACTAAAGGCAAACAAAC
TTCGGGCTATATCGAAGCCAATGGACATGTTTATACCGTACTCCCCGGCAACTATATCGGCCAAAACCACGGACGTATCC
AATCTATCATTGCGGATAAGATTTTAATTACCGAATTAGTCGAAGACAGCAATGGAAATTGGACATACCGTAAAGCAGAA
CTATTATTGAGCAGCTCAGACAATAACCGTGACGCCGCTCAAAACAACAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3CRX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

54.386

96.61

0.525

Multiple sequence alignment