Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PD5205_RS13710 Genome accession   NZ_LT853885
Coordinates   2929161..2929676 (-) Length   171 a.a.
NCBI ID   WP_002802020.1    Uniprot ID   A0A1Y6HKN0
Organism   Xanthomonas fragariae strain PD5205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2924161..2934676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD5205_RS13690 (PD5205_02759) - 2924347..2924955 (-) 609 WP_002802016.1 nucleotidyltransferase family protein -
  PD5205_RS21405 - 2924952..2925125 (-) 174 WP_156775364.1 hypothetical protein -
  PD5205_RS20790 (PD5205_02760) - 2925135..2925464 (+) 330 WP_134656615.1 hypothetical protein -
  PD5205_RS13695 (PD5205_02761) - 2925589..2926602 (-) 1014 WP_040761920.1 XdhC family protein -
  PD5205_RS13700 - 2926599..2926994 (-) 396 Protein_2689 molybdopterin cofactor-binding domain-containing protein -
  PD5205_RS21410 - 2926995..2927225 (-) 231 Protein_2690 NAD(P)-dependent alcohol dehydrogenase -
  PD5205_RS13705 (PD5205_02763) - 2927521..2929005 (+) 1485 WP_002802019.1 sensor domain-containing diguanylate cyclase -
  PD5205_RS13710 (PD5205_02764) ssb 2929161..2929676 (-) 516 WP_002802020.1 single-stranded DNA-binding protein Machinery gene
  PD5205_RS13720 (PD5205_02765) - 2929951..2930949 (+) 999 WP_002802028.1 polyprenyl synthetase family protein -
  PD5205_RS13725 (PD5205_02766) - 2931137..2931937 (-) 801 WP_040761902.1 dienelactone hydrolase family protein -
  PD5205_RS13730 (PD5205_02767) murD 2932101..2933510 (-) 1410 WP_002802032.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18559.43 Da        Isoelectric Point: 5.0179

>NTDB_id=1146460 PD5205_RS13710 WP_002802020.1 2929161..2929676(-) (ssb) [Xanthomonas fragariae strain PD5205]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATSSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGMGGDRPQRSQAPRQQQGGGGGGQGGGQDYAPPRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1146460 PD5205_RS13710 WP_002802020.1 2929161..2929676(-) (ssb) [Xanthomonas fragariae strain PD5205]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGTAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATTACCCGCGTCAGTCTGGCTACCAGCAGCATGCGCAAGGACCGCGAGGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGATGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCTCGCAGGCCCCGCGCCAGCAGCAGGGCG
GCGGTGGCGGCGGTCAGGGTGGCGGTCAGGATTACGCCCCGCCTCGTCAGCAGCCGGCCCAGCAGCAATCGGCACCGCCG
ATGGACGATTTTGCCGACGATGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6HKN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.222

100

0.497
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.491
  ssb Neisseria meningitidis MC58

45.455

100

0.468
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.468

Multiple sequence alignment