Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PD885_RS06185 Genome accession   NZ_LT853882
Coordinates   1342969..1343484 (+) Length   171 a.a.
NCBI ID   WP_002802020.1    Uniprot ID   A0A1Y6HKN0
Organism   Xanthomonas fragariae strain PD885     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1337969..1348484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD885_RS06165 (PD885_01228) murD 1339135..1340544 (+) 1410 WP_002802032.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  PD885_RS06170 (PD885_01229) - 1340708..1341508 (+) 801 WP_040761902.1 dienelactone hydrolase family protein -
  PD885_RS06175 (PD885_01230) - 1341696..1342694 (-) 999 WP_002802028.1 polyprenyl synthetase family protein -
  PD885_RS06185 (PD885_01231) ssb 1342969..1343484 (+) 516 WP_002802020.1 single-stranded DNA-binding protein Machinery gene
  PD885_RS06190 (PD885_01232) - 1343640..1345124 (-) 1485 WP_002802019.1 sensor domain-containing diguanylate cyclase -
  PD885_RS21350 - 1345420..1345650 (+) 231 Protein_1183 NAD(P)-dependent alcohol dehydrogenase -
  PD885_RS06195 - 1345651..1346046 (+) 396 Protein_1184 molybdopterin cofactor-binding domain-containing protein -
  PD885_RS06200 (PD885_01234) - 1346043..1347056 (+) 1014 WP_040761920.1 XdhC family protein -
  PD885_RS20535 (PD885_01235) - 1347181..1347555 (-) 375 WP_145954069.1 hypothetical protein -
  PD885_RS06205 (PD885_01236) - 1347690..1348298 (+) 609 WP_002802016.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18559.43 Da        Isoelectric Point: 5.0179

>NTDB_id=1146439 PD885_RS06185 WP_002802020.1 1342969..1343484(+) (ssb) [Xanthomonas fragariae strain PD885]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATSSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGMGGDRPQRSQAPRQQQGGGGGGQGGGQDYAPPRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1146439 PD885_RS06185 WP_002802020.1 1342969..1343484(+) (ssb) [Xanthomonas fragariae strain PD885]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGTAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATTACCCGCGTCAGTCTGGCTACCAGCAGCATGCGCAAGGACCGCGAGGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGATGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCTCGCAGGCCCCGCGCCAGCAGCAGGGCG
GCGGTGGCGGCGGTCAGGGTGGCGGTCAGGATTACGCCCCGCCTCGTCAGCAGCCGGCCCAGCAGCAATCGGCACCGCCG
ATGGACGATTTTGCCGACGATGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6HKN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.222

100

0.497
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.491
  ssb Neisseria meningitidis MC58

45.455

100

0.468
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.468

Multiple sequence alignment